Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haplochromis_20burtoni_20[refseq_20GCF_5F000239415.1_202011-12-22] 8,001 sequences; 831,411,547 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq330 149 1e-33 seq146 113 9e-23 seq3236 102 2e-19 >seq330 Length=683855 Score = 149 bits (164), Expect = 1e-33 Identities = 161/212 (76%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 117 ATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGC 176 || || |||||||||||||||||||||| | |||| |||||||||| ||||||| | Sbjct 223357 ATCACTGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACACTGAGTGGAT 223298 Query 177 CAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTG 236 || | || | |||| |||| ||| ||||||| | | || | | ||||| | Sbjct 223297 CAGCATGTGTCTACCCTTCGCCGAGAGGCGTGGGTAACCCGTTGAACCCCACTCGTGATA 223238 Query 237 GGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATC 296 ||||| ||| |||| ||||||| | | | |||||||||| || ||||||||| ||||| Sbjct 223237 GGGATTGAGGATTGGAATTATTTCCCATGAACGAGGAATTCCCAGTAAGCGCAGGTCATA 223178 Query 297 AGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||| |||||||| || |||||||| ||||||| Sbjct 223177 AGCTCGCGTTGA-TAAGTCCCTGCTCTTTGTA 223147 >seq146 Length=1442430 Score = 113 bits (124), Expect = 9e-23 Identities = 157/216 (73%), Gaps = 3/216 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 947903 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACACGA-GATTGAG-CAATAACAGGTCTGTG 947960 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | ||| |||||| ||| ||||||| | || || || | Sbjct 947961 ATGCCCTTAGATGTCCAGGGGTGCACGCACGCCACACTGAGTGGATCAGCGTGTGTCTAC 948020 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 |||| |||| | | |||||| | | || | | ||||| ||||| | | |||| Sbjct 948021 CCTTCGCCGAGATGCTAGGGTAACCCGTTGAACCCCACTCGTGACAGGGATTGGGGATTG 948080 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGC 286 |||||||| | | | |||||||||| || ||||||| Sbjct 948081 CAATTATTACCCATGAACGAGGAATTCCCAGTAAGC 948116 >seq3236 Length=7054 Score = 102 bits (112), Expect = 2e-19 Identities = 77/91 (85%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 237 GGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATC 296 ||||| | | |||||||||||| | | | ||| |||||| || |||||||||| ||||| Sbjct 2701 GGGATTGGGGATTGCAATTATTTCCCATGAACAAGGAATTCCCAGTAAGCGCGGGTCATA 2642 Query 297 AGCACGCGTTGATTACGTCCCTGCCCTTTGT 327 ||| ||||||||||| ||||||||||||||| Sbjct 2641 AGCTCGCGTTGATTAAGTCCCTGCCCTTTGT 2611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947124214528