Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haplochromis_20burtoni_20[refseq_20GCF_5F000239415.1_202011-12-22] 8,001 sequences; 831,411,547 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq13 327 4e-87 seq1728 242 1e-61 seq679 122 3e-25 seq144 98.7 3e-18 seq113 98.7 3e-18 seq190 89.7 2e-15 seq141 89.7 2e-15 seq112 86.0 2e-14 seq348 77.0 1e-11 seq300 77.0 1e-11 >seq13 Length=4128974 Score = 327 bits (362), Expect = 4e-87 Identities = 287/354 (81%), Gaps = 15/354 (4%) Strand=Plus/Plus Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCC--GA---AACGGCT--C 239 |||||| ||||| ||||| ||||||||||||| | | | || | | || | Sbjct 3378775 TTAAGTGAAAAATGGATAAC---AGTGGTATTTCACCAGTGGCTGGAGCCACCCCCTTCC 3378831 Query 240 CCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAG 299 ||||||||||||||||||||| ||| ||||||| | | |||||| |||| | ||| || Sbjct 3378832 CCACTTATTCTACACCTCTCATGTCTTTTCACAGTGCCAAACTAGAATCAAACCCAATAG 3378891 Query 300 GGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATA 359 |||||||||||||| |||||| || |||||||||||||||||||||||||| | ||| | Sbjct 3378892 GGTCTTCTTTCCCCACTGATTATGCAAAGCCCGTTCCCTTGGCTGTGGTTTCTCAAGACA 3378951 Query 360 GTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACG 419 | || |||||||||||| |||||| || |||||||||||| |||||||| | |||||| Sbjct 3378952 GCAGCTAGGGACAGTGGAAATCTCATTCATCCATTCATGCATGTCACTAAGTTGATGACT 3379011 Query 420 AGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTG 479 || |||||||||||||||| |||||| |||||||||| || ||||| || |||| Sbjct 3379012 AGACATTTGGCTACCTTAACAGAGTCGTAGTTACTCCTGCTGTTTATCCAAGCTT----- 3379066 Query 480 AATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||| || ||||||| |||||||||||||||||||||| |||||| Sbjct 3379067 CATTTCTTCACTTCGATATTCAGAACACTGGGCAGAAATCACATTGCATCAACA 3379120 >seq1728 Length=29552 Score = 242 bits (268), Expect = 1e-61 Identities = 166/187 (89%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 347 GTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCAC 406 |||||||||||||| || |||||||||||||||||||||| ||||||| ||||||||||| Sbjct 972 GTTTCGCTAGATAGCAGCTAGGGACAGTGGGAATCTCGTTCATCCATTTATGCGCGTCAC 913 Query 407 TAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTAC 466 |||||||||||| ||||||||||||| ||||| |||||| || | ||||| || || Sbjct 912 TAATTAGATGACAAGGCATTTGGCTAACTTAAAGGAGTCACGGTCGCCGCCGCCATTCAC 853 Query 467 CCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGC 526 || ||| | ||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 852 CCACGCATCATTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATCGC 793 Query 527 GTCAACA 533 ||||||| Sbjct 792 GTCAACA 786 Score = 102 bits (112), Expect = 3e-19 Identities = 79/94 (84%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| |||| | ||||||||||||||||||| Sbjct 1284 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACA 1225 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCC 100 |||| |||| ||| ||||||||| |||||||||| Sbjct 1224 GTTTGACAGGTGTACCGCCCCAGTCAAACTCCCC 1191 >seq679 Length=255205 Score = 122 bits (134), Expect = 3e-25 Identities = 87/99 (88%), Gaps = 1/99 (1%) Strand=Plus/Minus Query 435 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTG 494 ||||||||||| |||||||||| |||||| || || ||| ||||||||||||| ||| Sbjct 56390 TTAAGAGAGTCCTAGTTACTCCTGCCGTTGACT-GCACTTCATTGAATTTCTTCATTTTA 56332 Query 495 ACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||| ||||||||||||||||||| |||||| Sbjct 56331 ACATTCAGAGCATTGGGCAGAAATCACATTGCATCAACA 56293 >seq144 Length=1448439 Score = 98.7 bits (108), Expect = 3e-18 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 455 CCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAG 514 ||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 1158447 CCCGCCGTTTACCTGCGCTTCATTGAATTTCTTCACTTTGACATTCAGAGCACTAGGCAG 1158506 Query 515 AAATCACATTGC 526 || ||||||| Sbjct 1158507 TCATAACATTGC 1158518 >seq113 Length=1687717 Score = 98.7 bits (108), Expect = 3e-18 Identities = 88/109 (81%), Gaps = 1/109 (1%) Strand=Plus/Minus Query 6 TCTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTAT 65 |||| ||||| ||||| | ||||||| |||| |||| | ||||||||||||||| ||| Sbjct 628537 TCTTCTGCTCCACAGGTGGTTTCTGTCCTCCCTGAGCTCACCTTAGGACACCTGCATTAC 628478 Query 66 GGTTT-AACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 |||| |||||||| | ||||||| |||| ||||||||| || |||| Sbjct 628477 AGTTTGGACAGATGTACTGCCCCAGTCAAAGCCCCCACCTGCCACTGTC 628429 >seq190 Length=1155495 Score = 89.7 bits (98), Expect = 2e-15 Identities = 76/94 (81%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 364 ATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 423 || |||||||| |||||||| || ||||||||||| | | ||| ||| ||| | ||||| Sbjct 561131 ATTGGGACAGTAGGAATCTCATTCATCCATTCATGTCCTTTACTTATTTGATCATGAGGC 561190 Query 424 ATTTGGCTACCTTAAGAGAGTCATAGTTACTCCC 457 |||||||||| |||||||| | ||| |||| || Sbjct 561191 ATTTGGCTACTTTAAGAGAATTCTAGCTACTACC 561224 >seq141 Length=1467792 Score = 89.7 bits (98), Expect = 2e-15 Identities = 76/94 (81%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 20 GGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATGT 79 |||| || |||| |||| |||| | ||||||||||||||||||| |||| |||| ||| Sbjct 1002419 GGAGGTTCCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACAGTTTGACAGGTGT 1002360 Query 80 GCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 || ||||| ||||||||||||| | || |||| Sbjct 1002359 ACCCCCCCATTCAAACTCCCCACCAGCCACTGTC 1002326 >seq112 Length=1692099 Score = 86.0 bits (94), Expect = 2e-14 Identities = 82/104 (79%), Gaps = 2/104 (2%) Strand=Plus/Minus Query 430 CTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCA 489 || ||||||||| ||| ||||||| | ||||||| || ||| | |||||||||| Sbjct 545777 CTCCCTTAAGAG--TCACGATTACTCCTGGAGTTTACCTGCACTTTCTGAAATTTCTTCA 545720 Query 490 CTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||| |||||||||| |||||| |||||||| ||| | |||||| Sbjct 545719 CTTCGACATTCAGACCACTGGCCAGAAATCTCATCACCTCAACA 545676 >seq348 Length=642861 Score = 77.0 bits (84), Expect = 1e-11 Identities = 71/89 (80%), Gaps = 1/89 (1%) Strand=Plus/Minus Query 25 TTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCGC 84 ||||||| |||| |||| | |||||||| |||||||||| |||| |||| ||| | | Sbjct 293928 TTTCTGTCCTCCCTGAGCTCGCCTTAGGATACCTGCGTTACAGTTTGACAGGTGTAACAC 293869 Query 85 CCCAGCCAAACTCCCCACCTGACAATGTC 113 || || ||| ||||||||||| || |||| Sbjct 293868 CCAAGTCAA-CTCCCCACCTGCCACTGTC 293841 >seq300 Length=751574 Score = 77.0 bits (84), Expect = 1e-11 Identities = 42/42 (100%), Gaps = 0/42 (0%) Strand=Plus/Minus Query 419 GAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCC 460 |||||||||||||||||||||||||||||||||||||||||| Sbjct 88139 GAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCC 88098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635069167648