Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haplochromis_20burtoni_20[refseq_20GCF_5F000239415.1_202011-12-22] 8,001 sequences; 831,411,547 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq3087 324 4e-86 seq1354 188 2e-45 seq539 170 6e-40 seq134 140 1e-30 seq367 113 1e-22 seq2713 105 2e-20 seq41 100 9e-19 seq193 95.1 4e-17 seq354 91.5 4e-16 seq313 77.0 1e-11 >seq3087 Length=7638 Score = 324 bits (358), Expect = 4e-86 Identities = 400/535 (75%), Gaps = 39/535 (7%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATT-GTCACTAC 58 |||||||||||||||||| | || | |||||| ||||||| ||||| || |||||||| Sbjct 2629 GTACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTTCGTCACTAC 2570 Query 59 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCG 118 |||| | ||| ||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 2569 CTCCTCAAGTCAGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCA 2510 Query 119 TTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGG 178 ||||||||||||||| || ||||| ||||||| ||||||| |||||| | | ||| | | Sbjct 2509 TTTCTCAGGCTCCCTTTCTGGAATTGAACCCTGATTCCCCATTACCCATGGTCACCGTAG 2450 Query 179 TAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGG 238 || || ||||||||||||||||||||||||| ||| |||||| | || ||| Sbjct 2449 TACTTACATAAAGTACCATCGAAAGTTGATAGGGCAGACATTCGAATGAGACGTCACCGC 2390 Query 239 CTC--AAGGCCATGCGATTCGTT--AAGTTATTATGAATCACCAA----------GGAGC 284 | | | ||||| || || | | | |||| || ||||||| | | | Sbjct 2389 CACGGAGGGCCA-GCAATCAGCTCGAGATTATCTAGAGTCACCAAAGTGGCTAGGGCACC 2331 Query 285 CCCGA-AGGGCG-------TTGGTTTTTTATCTAATAAATACACCCCTTCC--GA-AGTC 333 |||| ||| || ||||||| ||| |||||| ||| | | || || ||| Sbjct 2330 TCCGAGAGGACGCCTCACACTGGTTTTGGGTCTGATAAATGCACGCATACCCGGAGGGTC 2271 Query 334 -GGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTA-- 390 | | | || |||||||||| ||||||||| ||| |||| ||| ||||| | | Sbjct 2270 AGCGCTCGTTTGCATGTATTATTTCTAGAATTGCCA--GTTAACCA---AGTAACGGATG 2216 Query 391 --CTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTG 448 | |||||| ||| |||||| |||||||||||||||| ||||||||||||| | Sbjct 2215 AGCGATCAAAGGAACCATAACTCATTTAATGAGCCATTCTCAGTTTCACTGTACCAGCCG 2156 Query 449 CTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 ||| ||||||||| ||||||||||| |||||||||||| ||| || ||||| ||| Sbjct 2155 CTTGTACTTAGACCTGCATGGCTTAGTCTTTGAGACAATCATTTG-CTACTTGCA 2102 >seq1354 Length=55969 Score = 188 bits (208), Expect = 2e-45 Identities = 179/228 (79%), Gaps = 7/228 (3%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||||||||||| | | |||||| ||||||| ||| | | |||||||| | Sbjct 48410 GTACTCATTCCAATTACAGGCCTTGAAAGAGTCCTGTATTGTTATCTTTCGTCACTACAT 48469 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||| ||||||| |||||||||||| | | |||||||||| ||||||||| |||| ||| Sbjct 48470 CCCCAAGTCGGGAGTGGGTAATTTGCACTC-TGCTGCCTTCTTTGGATGTGCTAGCTGTT 48528 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 | ||||||||||||| |||||| ||||||| |||||||||||||||| | ||||| | Sbjct 48529 TTTCAGGCTCCCTCTTCGGAATTGAACCCTGATTCCCCGTTACCCGTGGTCACCATTAAA 48588 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAA 228 ||| || |||| | ||| ||||||||| ||| |||||| Sbjct 48589 GGCACATAAAGTACC------ACTTGCTAGGGCAGACATTCAAATGAA 48630 >seq539 Length=380082 Score = 170 bits (188), Expect = 6e-40 Identities = 181/234 (77%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 6 CATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCC 64 ||||| |||||| | || |||||| ||||||| ||||| | |||||||||||| Sbjct 148601 CATTCACATTACAGGGCCTTGAAAGAGTCCTGTATTGTTATTTTTCATCACTACCTCCCT 148660 Query 65 GTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTC 124 | ||||||| || | ||||| ||| |||||||||||||||||||||||| | ||| || Sbjct 148661 GAGTCGGGAGGGGATCATTTGTGCGTGTGCTGCCTTCCTTGGATGTGGTAGTC-TTTGTC 148719 Query 125 AGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTG-ATACCATGGTAGGC 183 ||| | ||||||||||||||||||| ||||||| ||||| || | | ||||| |||| Sbjct 148720 AGGTT--CTCTCCGGAATCGAACCCTGATTCCCCATTACCTGTGGTCAAACATGGCAGGC 148777 Query 184 CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG 237 || | |||||||||||| ||| |||| ||| |||||| |||||||| Sbjct 148778 AGATAAAGTGCCATCGAAAGTTAATATGGCAAGCATTCGAATGAGACATCGCCG 148831 >seq134 Length=1521924 Score = 140 bits (154), Expect = 1e-30 Identities = 94/104 (90%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 401 AACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGA 460 ||| ||||||||||||||||||||||||||||||||||||| | || | |||||||| Sbjct 379746 AACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGCGTGTACTTAGA 379687 Query 461 CATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 | ||||||||||||||||||||||||||||||| |||||||||| Sbjct 379686 CCTGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 379644 >seq367 Length=627719 Score = 113 bits (124), Expect = 1e-22 Identities = 224/326 (69%), Gaps = 33/326 (10%) Strand=Plus/Minus Query 167 TTGAT--ACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAA 224 ||||| |||||||||||| | |||||| ||| |||||||| | || ||||||| Sbjct 575217 TTGATTCACCATGGTAGGCACATGAAATACCATTAAAAATTGATAGGCC-GACATTTGAA 575159 Query 225 TGAACCATCGCCGGCTCA-AGGCCATGCGATTCGTTAA--GTTATTATGAATCACCAA-- 279 ||| |||| ||| ||| ||| | | ||| | | | ||||| || ||||||| Sbjct 575158 TGAGGCATCACCGCTTCAGAGGACCAGTGATCAGCTCAAGGTTATCTAGAGTCACCAAAG 575099 Query 280 -GGAGCCCCGAAGG---------GCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGA 329 || ||||| ||| || ||||||| ||| |||| | ||| | | || | Sbjct 575098 CGGCGCCCCTGAGGTTACACCCCGCAAGGGTTTTTGGTCTGATAAGTGCACGCATACCCA 575039 Query 330 AGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA-AGG 388 || || |||||||||||||||| |||| |||||||| ||||| | | Sbjct 575038 G------------AGGAT-TATTAGCTCTAGAATTTCCACAGTTATCCAAGTAGTGGATG 574992 Query 389 TACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTG 448 | |||| | ||| |||| |||||||||||||||||||||||||||||| | | Sbjct 574991 AGCGATCATAGGAACCATAAGTGATTTAATGAGCCATTCGCAGTTTCACTGCACCGGCCA 574932 Query 449 CTTATACTTAGACATGCATGGCTTAA 474 | | ||||||||| ||||| |||||| Sbjct 574931 CATGTACTTAGACCTGCAT-GCTTAA 574907 >seq2713 Length=9324 Score = 105 bits (116), Expect = 2e-20 Identities = 103/132 (78%), Gaps = 7/132 (5%) Strand=Plus/Minus Query 338 TTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTA----CTA 393 || || ||||||||||||||||||||| |||| ||||||| ||||| | | | | Sbjct 1006 TTGTTTGCATGTATTAGCTCTAGAATTGCCACATTTATCCA---AGTAACGGATGAGCGA 950 Query 394 TCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTAT 453 ||||| ||| |||| |||||||||||||||||| ||||||||||||| | || | | Sbjct 949 TCAAAGGAACCATAAGTGATTTAATGAGCCATTCACAGTTTCACTGTACTGGCCGCGTGT 890 Query 454 ACTTAGACATGC 465 |||||| | ||| Sbjct 889 ACTTAGGCCTGC 878 >seq41 Length=2770156 Score = 100 bits (110), Expect = 9e-19 Identities = 122/162 (75%), Gaps = 12/162 (7%) Strand=Plus/Plus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACT-ATCAAATAAA 402 |||||| |||||| |||||| |||||||| || | | | | |||||| || Sbjct 2123827 GCATGT--TAGCTCCAGAATT------GTTATCCAAATAACCAAGGAGTGATCAAAGGAA 2123878 Query 403 CGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACA 462 | ||||||||||||||||||||||| ||| ||||||| |||| | |||||| || Sbjct 2123879 CCATAACTGATTTAATGAGCCATTCACAGCTTCACTGAGGCAGTTGCATGTACTTACACC 2123938 Query 463 TGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||| |||||| ||||| |||||||| ||||||| ||| Sbjct 2123939 AGCATGGATTAATC--TGAGATAAGCATAT-ACTACTGACAG 2123977 Score = 91.5 bits (100), Expect = 4e-16 Identities = 101/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 95 TGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATT 154 ||| || |||||||||||||| | ||||||||||||| ||||| |||| ||||||||| | Sbjct 2123629 TGCTTTTCTTGGATGTGGTAGGCATTTCTCAGGCTCCTTCTCCAGAATTGAACCCTAAAT 2123688 Query 155 CCCCGTTACCCGTTGATACCATGGTAGGCCACTA-TCCTACCATCGAAAGTTGATAGGGC 213 | ||||||| ||||||||| | ||| | | |||||||||| | || |||| Sbjct 2123689 CTGTGTTACCCACAATCACCATGGTACG-CACAAGAAGTTCCATCGAAAGCTAATGGGGC 2123747 Query 214 AGAAATTTGAAT 225 || ||| |||| Sbjct 2123748 GGACATTCGAAT 2123759 >seq193 Length=1133033 Score = 95.1 bits (104), Expect = 4e-17 Identities = 92/117 (79%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 2 TACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||| ||||||| |||| | || |||||||| | |||| ||||| | ||||||||| Sbjct 435458 TACTAATTCCAACTACAGGGCCTCAAAAGAGTCATGTACTGTTATTTTTCATCACTACCT 435399 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCC 117 | | || |||| |||||||||||| ||||||||| ||||||||| |||||||| Sbjct 435398 CTTCAGGTTGGGAATGGGTAATTTGCTTCCCTGCTGCCATCCTTGGATATGGTAGCC 435342 >seq354 Length=633091 Score = 91.5 bits (100), Expect = 4e-16 Identities = 154/222 (69%), Gaps = 1/222 (0%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACA-AGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 |||||||||||| ||||| | ||| || ||| | |||| ||||| | ||| ||| Sbjct 200040 GTACTCATTCCAGTTACAGATCCCCCAACGAGTTCGGTATTGTTATTTTTCATCATAACC 199981 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 | | | | |||||||||||||| | | ||| || ||||||||||| | ||||| || Sbjct 199980 CCTCTGAACTGAGATTGGGTAATTTGTGTGACTGTTGACTTCCTTGGATATAGTAGCTGT 199921 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 || ||| | ||||| | | || || || ||||| ||||| | | | || |||| Sbjct 199920 ATCCAAGGGTTCCTCTACAGGATTAAATCCGGATTCCTGGTTACTCATGGCCACGATGGC 199861 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTT 221 | || || ||| ||| | || |||| ||||||| |||| Sbjct 199860 ACGCACATAAAGTACTATCAAGAGATGATTGGGCAGATATTT 199819 >seq313 Length=708424 Score = 77.0 bits (84), Expect = 1e-11 Identities = 84/108 (78%), Gaps = 8/108 (7%) Strand=Plus/Minus Query 338 TTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTA----CTA 393 || || |||||||| |||||||||||| | | |||||| || ||||| | | | | Sbjct 634943 TTGTTTGCATGTAT-AGCTCTAGAATTGCTGCAGTTATC--TG-AGTAATGGATGAGCAA 634888 Query 394 TCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA 441 ||||| ||| ||||||||||||| || |||| |||||||||||||| Sbjct 634887 TCAAAGGAACCATAACTGATTTAAAGAAACATTTGCAGTTTCACTGTA 634840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510279152896