Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haplochromis_20burtoni_20[refseq_20GCF_5F000239415.1_202011-12-22] 8,001 sequences; 831,411,547 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq113 223 3e-53 seq2861 123 2e-23 seq230 123 2e-23 seq47 111 1e-19 seq19 95.1 1e-14 >seq113 Length=1687717 Score = 223 bits (246), Expect = 3e-53 Identities = 398/574 (69%), Gaps = 8/574 (1%) Strand=Plus/Plus Query 66005 AGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATT 66064 || || | ||| || || ||||| || || | |||||| || |||||||| ||| Sbjct 900494 AGAGCGACAGAGGCCAGATTGCAAACCGCCACCTCGTCCTTGCTAGTGTACTCGACGATT 900553 Query 66065 TCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTG 66124 || ||||| || || ||||| |||||||||| |||||| || || ||||| | ||| Sbjct 900554 TCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTG 900613 Query 66125 CATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCG 66184 || ||||| ||||| | ||||||||| || ||||| || || ||||| ||||| || Sbjct 900614 CAGGCATCTTTGTAGACCATGTACGGCGTCCCGGTTTCTGTCTGCGACTCGATGATTGCA 900673 Query 66185 TGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGTTCGTAA-TGTTC 66243 | ||| || | ||||||||| ||| | |||| || | || || || | Sbjct 900674 TACCATAGCTGCTGAGCCTTCACCACACGCTTCACCCTCCCCTCCTTCTCATATCTGGT- 900732 Query 66244 GTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACA 66303 |||||| | ||| || || ||||| || ||| | || || | | ||||| Sbjct 900733 GTAGAGTTCTTCAAACTCCTCCCCCCAGCACTCATCCAGCCCGGGGCAGTCGGCCGGACA 900792 Query 66304 CATCAGCGACCAATCACCATCCTGTTCT--ACACGACGCATAAATAGATCAGGTATCCAG 66361 |||||| ||||| || | | |||||| || || ||| || || ||||| ||||| Sbjct 900793 CATCAGGGACCAGTCTTCGT--TGTTCTCCACCCGCTTCATGAAGAGGTCAGGGATCCAC 900850 Query 66362 AGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCT-CAATGCCGTGATTTTTGCGCAAGTC 66420 ||||||||||| || || | ||||| ||||||| | | ||||| || || || || Sbjct 900851 AGGGCGTAGAACAGGTCCCTGGCTCGCTGCTCCTCCTTTCCCGTG-TTCTTCTTCAGCTC 900909 Query 66421 GAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACG 66480 ||||| ||||| | ||| ||||| || |||||||| |||||||| | ||| | Sbjct 900910 CAGGAAGTCAAACACATCGAAGTGCCAGGGCTCCAGGTACATGGCGAAGGCGCCGGGTCT 900969 Query 66481 TTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTAC 66540 |||| ||| || || || || || || || |||||| | || | |||||| || || Sbjct 900970 TTTGTTGCCCCCCTGATCAACATAACGCGCTGTGTTGTTGTAAACCCTCAACATTGGGAC 901029 Query 66541 GAGCCCGTTAGATTTGCCATTGGTGCCGTCGATG 66574 ||||||||| || ||||||||||||| ||||| Sbjct 901030 GAGCCCGTTGGAACAGCCATTGGTGCCGGCGATG 901063 >seq2861 Length=8583 Score = 123 bits (136), Expect = 2e-23 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| |||||| ||||| || ||||||| || ||||||||||| ||||||| Sbjct 5764 TGGAGCGCTTCATGCAGGAAGTGCAGGTAACGGAGGCCCGGTGTTTCTACGGTTTCCAGA 5823 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | ||||||||||| ||||||| ||||||||||| | || ||||| |||||||||| || Sbjct 5824 TCGCCATGGAGAACATCCACTCAGAGATGTACAGCCTGCTGATCGACACGTACATCAAGG 5883 Query 61376 A 61376 | Sbjct 5884 A 5884 Score = 87.8 bits (96), Expect = 1e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTAC 61101 || || ||||| || ||||| | |||||||| ||||| | ||||| |||| |||||| Sbjct 5397 GACAACCCTCGCCGCTTCGTCATCTTCCCCATTGAGTACCACGATATCTGGCAGATGTAC 5456 Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 || ||||| || || ||||||||||||| |||||||| Sbjct 5457 AAGAAGGCAGAGGCGTCCTTCTGGACGGCAGAGGAGGT 5494 >seq230 Length=973959 Score = 123 bits (136), Expect = 2e-23 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| |||||| ||||| || ||||||| || ||||||||||| ||||||| Sbjct 833182 TGGAGCGCTTCATGCAGGAAGTGCAGGTAACGGAGGCCCGGTGTTTCTACGGTTTCCAGA 833123 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | ||||||||||| ||||||| ||||||||||| | || ||||| |||||||||| || Sbjct 833122 TCGCCATGGAGAACATCCACTCAGAGATGTACAGCCTGCTGATCGACACGTACATCAAGG 833063 Query 61376 A 61376 | Sbjct 833062 A 833062 Score = 87.8 bits (96), Expect = 1e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTAC 61101 || || ||||| || ||||| | |||||||| ||||| | ||||| |||| |||||| Sbjct 833549 GACAACCCTCGCCGCTTCGTCATCTTCCCCATTGAGTACCACGATATCTGGCAGATGTAC 833490 Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 || ||||| || || ||||||||||||| |||||||| Sbjct 833489 AAGAAGGCAGAGGCGTCCTTCTGGACGGCAGAGGAGGT 833452 >seq47 Length=2629205 Score = 111 bits (122), Expect = 1e-19 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 66050 GTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGA 66109 || ||||| || || || ||||||||||| ||| | |||||||||| || || ||| Sbjct 775288 GTGTACTCTACGATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGGTTTTGCTGA 775347 Query 66110 TTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGG 66169 |||||||| | ||||| ||||||||||| | |||||| || || || || || || Sbjct 775348 TTACTCTTTCTGTTGCAGGCATCCTTGTAAACCATGTATGGTGTACCAGTTTCTGTCTGC 775407 Query 66170 GACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACC 66208 |||||||||||||||| ||| || | ||||||||| Sbjct 775408 GACTCAATGATGGCGTACCACAGCTGCTGAGCCTTCACC 775446 >seq19 Length=3626725 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||||||||| || | || ||||| | |||||| |||| ||||| ||| |||| | Sbjct 2020815 CAGGAGGTGCAGGTCCCTGAAGCGCGATCCTTCTACAGCTTTCAGATCCTCATAGAGACT 2020874 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 |||||||| |||||||||||| | |||||| | || ||||| ||||| Sbjct 2020875 GTCCACTCAGAGATGTACAGTATGCTCATCAACACTTACATTAGGGA 2020921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397529232274640