Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq24504 188 1e-45 seq6385 73.4 8e-11 >seq24504 Length=344 Score = 188 bits (208), Expect = 1e-45 Identities = 222/294 (76%), Gaps = 11/294 (4%) Strand=Plus/Minus Query 1 TAGCCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCC 60 || ||||| |||| || ||| || |||||| ||| |||| |||||||||||||||| Sbjct 298 TATCCCGATAAGGGATGTTAAA-AGTACCTGAAACCGTGCGCTTACAAGCGGTCGGAGC- 241 Query 61 GAGTGATTCGG-----TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCA 115 | | ||||| |||||||||||||||||||||||||||| ||||||| | || Sbjct 240 -ACTTCTTCGGAGGTGTGACGGCGTGCCTTTTGCATAATGAGCCGGCGAGTTAATT-TCT 183 Query 116 CCAGCGAGGTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCG 175 || || ||||| | | | | || || ||||| ||||||||| ||||| ||||| Sbjct 182 GTGGCAAGCTTAAGCGGTACCCCCGCGC-AGGCGAAGCGAAAGCGAGTCTTAAATGGGCG 124 Query 176 A-CGAGTTGGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCG 234 | | ||| | || ||||||||||||| |||||||||||| | |||||||||| Sbjct 123 AACCAGTCGCAGGGATTAGACGCGAAACCGAGTGATCTACCCATGGCCAGGTTGAAGGGA 64 Query 235 CGGTAACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGA 288 ||||||| ||| |||||||||||||| ||| |||||||||| || |||||| Sbjct 63 CGGTAACACGTCCTGGAGGACCGAACCCGTATTCGTTGAAAAGAATTGGGATGA 10 >seq6385 Length=211 Score = 73.4 bits (80), Expect = 8e-11 Identities = 88/119 (74%), Gaps = 2/119 (2%) Strand=Plus/Plus Query 145 AGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGA--GTTGGTGGCGCTAGACGCGAAAC 202 ||||| || ||||||||| ||||| |||||||| | || | ||| ||||| |||||| Sbjct 48 AGCCGTAGCGAAAGCGAGTCTTAATAGGGCGACTATAGTCGCTGGGAGTAGACCCGAAAC 107 Query 203 CTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGAGGACCGAACC 261 | |||||| ||| | |||||||||| ||||| | |||||||||||||| Sbjct 108 CGGACGATCTATCCATGGCCAGGTTGAAGGTTGGGTAAAACTAACTGGAGGACCGAACC 166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972436396544