Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq22682 181 3e-43 seq17128 113 1e-22 seq14424 87.8 4e-15 >seq22682 Length=300 Score = 181 bits (200), Expect = 3e-43 Identities = 238/332 (72%), Gaps = 32/332 (10%) Strand=Plus/Plus Query 72 ATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGT 131 |||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||| | Sbjct 1 ATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTTGCTGAT 60 Query 132 CATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCT 191 |||||||| | |||||||| |||||| | || ||| |||||||||||| ||||||| || Sbjct 61 CATCCTCTAAAACCAGCTATAGATCGTAGGCTTGGTAGGCCATTACCCCACCAACTACCT 120 Query 192 AATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGCG 251 |||| | ||| | |||| | | || | || | ||| | || | Sbjct 121 AATCTAACGCGGGCTAATCCTTTGGCGATA------AATCTTTCCCCCGAAGGGC----- 169 Query 252 ACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCC 311 | || |||||||| | |||||||||| || ||| || ||| |||| ||||| Sbjct 170 ---TCATACGGTATTACTCTCCGTTTCCAGAGGCTATTCCGTACCAAAGGGCATATTCCC 226 Query 312 AGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGT 371 | | ||||| ||||||||||| ||| | |||| | || || Sbjct 227 ACGCGTTACTAACCCGTCCGCCGCTC-ACCCCGAA-----AGGC------------GCGC 268 Query 372 TCGACTTGCATGTGTTAGGCCTGCCGCCAGCG 403 |||||||||||||||||||||||||||||||| Sbjct 269 TCGACTTGCATGTGTTAGGCCTGCCGCCAGCG 300 >seq17128 Length=237 Score = 113 bits (124), Expect = 1e-22 Identities = 117/152 (77%), Gaps = 1/152 (1%) Strand=Plus/Minus Query 256 TATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCC-AGA 314 |||| ||||||| | | |||| | || ||||||||| | ||| || || | Sbjct 152 TATGGGGTATTAATCTTCATTTCTAAAGGCTATCCCCCTGTAAAAGGTAGATTGTATACG 93 Query 315 CATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCG 374 | |||| ||||||| |||||||||||| | || |||||||| | |||||||||||| Sbjct 92 CGTTACGCACCCGTGCGCCACTCGTCATCAAAAGAGCAAGCTCTCTTATGTTACCGTTCG 33 Query 375 ACTTGCATGTGTTAGGCCTGCCGCCAGCGTTC 406 |||||||||||||||||||||||| ||||||| Sbjct 32 ACTTGCATGTGTTAGGCCTGCCGCTAGCGTTC 1 >seq14424 Length=230 Score = 87.8 bits (96), Expect = 4e-15 Identities = 72/85 (85%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 322 CACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCA 381 ||||||| |||| |||||||| ||| |||||| || |||| |||| |||||||||| Sbjct 148 CACCCGTGCGCCGGTCGTCAGCAAAGT-GCAAGCA-CTCCCTGCTACCCCTCGACTTGCA 205 Query 382 TGTGTTAGGCCTGCCGCCAGCGTTC 406 ||||||||||||||||| ||||||| Sbjct 206 TGTGTTAGGCCTGCCGCTAGCGTTC 230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1221943103552