Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq26129 233 5e-59 seq11851 118 3e-24 >seq26129 Length=392 Score = 233 bits (258), Expect = 5e-59 Identities = 262/347 (76%), Gaps = 4/347 (1%) Strand=Plus/Minus Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTG 121 ||||||||||||||| | |||| |||||||| |||||| || |||||||| |||| Sbjct 390 AGCGTTATCCGGAATCATTGGGTTTAAAGGGTCCGTAGGCGGGCCTGTAAGTCAGGGGTG 331 Query 122 AAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGG 181 |||||| | ||||||||| |||||||| |||| |||||||| || |||| | ||| Sbjct 330 AAAGGCCACGGCTCAACCGTGGGACTGCCCTTGATACTGCAGGTCTTGAGTCGTTGTGGG 271 Query 182 GCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGC 241 | |||| | ||||||||||||||||| ||||||| | ||||||| | || Sbjct 270 GTTGCCGGAACATGTGGTGTAGCGGTGAAATGCATAGATATCACATAGAACACCGATCGC 211 Query 242 GAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGG 301 |||||| | | | ||||||| |||| | |||||||||||||||| ||| || Sbjct 210 GAAGGCAGGTGACCAACAACGAACTGACGCTGATGGACGAAAGCGTGGGGAGCGAACGGG 151 Query 302 ATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAG 361 ||||||||||| ||||||||||||||||||||||| | ||||| ||||||| | | | Sbjct 150 ATTAGATACCCCGGTAGTCCACGCCGTAAACGATGGACACTAGCTGTCGGG--ACCTCGG 93 Query 362 TGCTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | || ||| | | ||| || | |||||| | |||||||||||||| Sbjct 92 T-CT-CGGCGGCCAAGCGAAAGTGATAAGTGTCCCACCTGGGGAGTA 48 >seq11851 Length=225 Score = 118 bits (130), Expect = 3e-24 Identities = 98/117 (84%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 227 AGGAACACCAGTG-GCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGC 285 |||| | ||||| ||||||||||||| ||| | ||||||| ||||| ||||||| Sbjct 132 AGGAGCGCCAGTTAGCGAAGGCGGCTTTTTGGCATA-AACTGACGTTGAGGGACGAAAGC 74 Query 286 GTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACT 342 ||||||||||||||||||| |||||||||||||||||||| ||||| |||||| || Sbjct 73 GTGGGGAGCAAACAGGATTCGATACCCTGGTAGTCCACGCTGTAAATTATGAATGCT 17 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202750279936