Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq782 104 4e-20 seq968 93.3 7e-17 seq1387 89.7 8e-16 seq456 89.7 8e-16 seq312 78.8 2e-12 >seq782 Length=5188642 Score = 104 bits (114), Expect = 4e-20 Identities = 93/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || |||| Sbjct 4879573 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAGT 4879516 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||| |||| ||||||| |||||||| |||||||||||||||||||||||| Sbjct 4879515 GGTGCGAGGCTAACATCTGCGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 4879462 >seq968 Length=220680 Score = 93.3 bits (102), Expect = 7e-17 Identities = 87/108 (81%), Gaps = 2/108 (2%) Strand=Plus/Minus Query 7 GAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCG 66 |||||||||| | |||||| | ||||| | || | || |||| || || || ||| Sbjct 162471 GAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAATGGTGCG 162414 Query 67 AAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 162413 AGGCTACCATCTGCGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 162366 >seq1387 Length=6006640 Score = 89.7 bits (98), Expect = 8e-16 Identities = 86/108 (80%), Gaps = 2/108 (2%) Strand=Plus/Plus Query 7 GAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCG 66 |||||||||| | |||||| | ||||| | || | || |||| || || || ||| Sbjct 818323 GAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAATGGTGCG 818380 Query 67 AAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||| |||||||| |||||||||||||| ||||||||| Sbjct 818381 AGGCTACCATCTGCGGGATTATGACTGAACGCCTCTAAATCAGAATCC 818428 >seq456 Length=206097 Score = 89.7 bits (98), Expect = 8e-16 Identities = 86/108 (80%), Gaps = 2/108 (2%) Strand=Plus/Minus Query 7 GAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCG 66 |||||||||| | |||||| | ||||| | || | || |||| || || || ||| Sbjct 153650 GAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAATGGTGCG 153593 Query 67 AAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||| |||||||| |||||||||||||| ||||||||| Sbjct 153592 AGGCTACCATCTGCGGGATTATGACTGAACGCCTCTAAATCAGAATCC 153545 >seq312 Length=2238381 Score = 78.8 bits (86), Expect = 2e-12 Identities = 91/118 (77%), Gaps = 6/118 (5%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCG---GCTGT-CTGACCAGG 56 |||||||||||||||| | ||||| | | ||||| | || ||| | |||| || Sbjct 766453 GTACGAGAGGAACCGCAGG-TTCAGCA-ATTTGGTGTATGTATGTGCTTTGCTGAGGAGC 766396 Query 57 CAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 || || ||||||| ||||||||| ||||||| ||||||||||||| ||||||||| Sbjct 766395 CAATGGTGCGAAGCCACCATCTGCGTGATTATGACTGAACGCCTCTATCTCAGAATCC 766338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 818903376128