Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq26229 199 1e-48 seq1189 183 9e-44 seq37372 87.8 5e-15 >seq26229 Length=395 Score = 199 bits (220), Expect = 1e-48 Identities = 276/376 (73%), Gaps = 18/376 (5%) Strand=Plus/Plus Query 133 TCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCT 192 |||||||||||||||||| |||||||||||||||| | || ||||| ||||||| | | Sbjct 1 TCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTCAACTCCTTGGTAAGCCACTACCTT 60 Query 193 ACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCG 252 |||| | | | |||||||||||||||| || ||| ||||||| | | | |||||| Sbjct 61 ACCAACTAGA--TGATAGGGCAGAAATTCGATCAAACTATCGCCGACATA--GTCATGCG 116 Query 253 ATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTG-GTTTTTTATCTAA 311 || |||||| || ||||| | || ||| || | || | |||| Sbjct 117 ATAATCACAGTTATCTAGATTCACCTGCTA--CCGGAAACCGGTGGAGTCGGTGGGCTAA 174 Query 312 TAAATACACCCCTTCCGA-AGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACG 370 ||||| || |||| |||| ||| ||| |||||||||||| |||| || |||| Sbjct 175 TAAATGACCCTGACCCGAGAGTCAGGGCTTTA--CATGTATTAGCTGTAGATTTGCCACA 232 Query 371 GTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCA 430 |||||||||| | | || ||| | | || |||||||||||| ||||| ||||||| Sbjct 233 GTTATCCATGGGCTTTG--ACGATCGAGCAGACTATAACTGATTTACTGAGCTATTCGCA 290 Query 431 GTTTCACTGTATAGATTGCTTAT--ACTTAGACATGCATGGCTTAATCTTTGAGACAAGC 488 |||||| | || || |||| |||| ||||||||||||||| |||||||||| ||| Sbjct 291 GTTTCAACAT---GAATG-TTATGAACTTGGACATGCATGGCTTAGTCTTTGAGACGAGC 346 Query 489 ATATGACTACTGGCAG 504 ||||||| |||||||| Sbjct 347 ATATGACCACTGGCAG 362 >seq1189 Length=793221 Score = 183 bits (202), Expect = 9e-44 Identities = 140/165 (85%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 5 TCATTCCAATTACAAGACCC--AAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCC 62 |||||||| ||||| | || ||||||| ||||| | ||||| | |||||||||||| Sbjct 667147 TCATTCCACTTACAGGGCCTCGAAAAGAGTCCTGTGTTGCTATTTTTCGTCACTACCTCC 667088 Query 63 CCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 122 ||||||||||| ||||||||||| || ||||| |||||||||| | || ||||||| ||| Sbjct 667087 CCGTGTCGGGAGTGGGTAATTTGTGCACCTGCAGCCTTCCTTGAACGTTGTAGCCGGTTC 667028 Query 123 TCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGT 167 |||||||||||||| ||||||||||||| ||||||| |||| ||| Sbjct 667027 TCAGGCTCCCTCTCTGGAATCGAACCCTGATTCCCCATTACTCGT 666983 >seq37372 Length=3272599 Score = 87.8 bits (96), Expect = 5e-15 Identities = 121/165 (73%), Gaps = 17/165 (10%) Strand=Plus/Minus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA--GTAAGGTACTATCAAATAA 401 |||| |||||||||| ||||| |||| |||||||| | | || || || |||||| Sbjct 3194022 GCATATATTAGCTCTCGAATTGCCACAGTTATCCAAGGAACGTT-GGAACGATCAAA--- 3193967 Query 402 ACGATAACTGATTTAATGAGCCATTCGCAGTTT--CACTGTATAGATTGCTTATACTTAG 459 |||||| | ||||| | | || ||| |||||||| || || | |||| | Sbjct 3193966 -------CTGATT-ACTGAGCTCTCCACACTTTAACACTGTATGGACTGTGTGTACTGCG 3193915 Query 460 ACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 || ||||||||||||||||||| | | |||||| |||||||||| Sbjct 3193914 ACTTGCATGGCTTAATCTTTGAAAGAGCCATATG-CTACTGGCAG 3193871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509835457792