Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq1148 315 6e-81
seq1486 149 5e-31
seq354 132 4e-26
>seq1148
Length=2189075
Score = 315 bits (348), Expect = 6e-81
Identities = 992/1510 (66%), Gaps = 59/1510 (4%)
Strand=Plus/Plus
Query 65432 TGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGAT 65491
|||||||||||||| || || | || || |||||| ||| | |||| |||
Sbjct 533097 TGGAACTCGCCGGAGAGCACCCTGCGTGTGTATATGTTGCTGGTGTACGCCTCAATGGAC 533156
Query 65492 TCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAG 65551
|| ||||||| || || || ||||| || || || |||||||| || | || || |
Sbjct 533157 TCGTTGTTGCCAAGGATCTGCGCAGTGGAGGCGGTGGGCATGGGCGCCAGCAGCAGGCTG 533216
Query 65552 TTTCGCAATCCGTTCATTTCAATGTTGT----GACGCAATTCGTCCCAGTTCCACATCGG 65607
|||| || |||| | | | || || | || | ||| |||| ||| ||||| |||
Sbjct 533217 TTTCTCACACCGTGCTTGGCGATCTTCTCCTTGA-GTAAT--GTCC-AGTCCCACAGCGG 533272
Query 65608 TTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGA 65667
||| | |||| | | |||||| || | || ||| | || | ||| | || ||
Sbjct 533273 -----CGTGGGAATCCGCTG-CCACATGTCATACTGGAGGATCCCCTTGCTGACAGGAGA 533326
Query 65668 ACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGC 65727
|| || | | ||||| || | ||| ||| || | ||||||| ||| || ||
Sbjct 533327 GCCCGGGTACGTCTCGTAGGGGCCGTGCTCAGCGGCCAGCTCGCAGCTGGCCTCCAGCGC 533386
Query 65728 GGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTA 65787
||| | || | |||||||| || | ||| ||| | ||||| |||||| |
Sbjct 533387 GGCGTAGTAGAGAGTCTCGAAGATCTGAATATTGAGTAGTTGCGCCTCGGGGCTCTCAAA 533446
Query 65788 CGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACG 65847
||| | ||| || | || | ||||||||| || || || || || || ||||| ||
Sbjct 533447 GGGCTGCCGCATGAGAATGAAGGCGTCGGCCAGCCCCTGGACGCCGATGCCAATGGGCCG 533506
Query 65848 ATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCG 65907
|| |||| ||||| || ||||||||| || |||||||| ||||| ||||| || |
Sbjct 533507 GTGGCGCATGTTGGAGCGCTGCGCCTCAGGCACCGGGTAGTAGTTGATGTCGATGATCCT 533566
Query 65908 ATTCAAATTGCGTGTC-ACCACATGCACGATACGTCGCAA--TTGTTCGAAATCAAAATG 65964
|| | || | || | | || | || | ||| | || || ||| || | ||
Sbjct 533567 GTTGAGGTT-CTTGACGATGACTTTGGTGACG-GCCGCCAGCTTCTT-GAAGTCGTA-TG 533622
Query 65965 TTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTT 66024
| || ||||| ||| || ||| ||| || || | || || |||||
Sbjct 533623 TG-----CGCTCGGGGGTGACGTACATG------TTG---AGCGCCACGGAGGCTAGGTT 533668
Query 66025 GCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCA 66084
||| || || | |||||| | ||| || ||||| || || |||||||| || |||||
Sbjct 533669 GCACACGGCCACCTCGTCCTGGCTGGTGTATTCGACGATCTCCGTGCACAGGTTGCTGCA 533728
Query 66085 GCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCAT 66144
|||||||||| ||||| || || |||||||||||||||||||||||||| | |||
Sbjct 533729 CTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTGCGATTGCATGCATCCTTGTAGAGCAT 533788
Query 66145 GTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTT 66204
|||||| ||||| ||||| || ||||| |||||||||| ||| | | || ||
Sbjct 533789 GTACGGCGTGCCCGTCTCTGTCTGAGACTCGATGATGGCGTACCACACCTGCTGGGCTTT 533848
Query 66205 CACCGTACGT---ACC--GCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAG 66259
|||| || ||| ||||| |||| || || || ||| | || ||
Sbjct 533849 CACCACCCGCTTGACCCGGCCCT-CCTTC----TCATAGCGTGTGTACAAAGCCTCAAAC 533903
Query 66260 GATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCA 66319
|||||||| ||| ||| | || |||| | ||||||||| |||||||| ||
Sbjct 533904 TCATCACCCCAGCACTCGTCCAGGCCAGGGCACTCATTTGGACACATGAGCGACCAGTCC 533963
Query 66320 CCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCG 66379
| ||||| | ||| || ||||| || |||||||| || |||| || ||
Sbjct 533964 TGGTTGCTCTCTACCCTCTTCATGAACAGATCTGGGATCCAGAGACCGAAGAACAGGTCA 534023
Query 66380 CGTGCTCGTTGCTCCTCAATGCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTC 66438
|| || || |||||||| |||| ||| || || || || ||||| || ||||||||
Sbjct 534024 CGGGCGCGCTGCTCCTCTTTGCCTGTG-TTCTTCTTCAGCTCCAGGAAGTCGAAGATGTC 534082
Query 66439 GGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTC 66498
||||| || |||||||| |||||||| | ||| || ||| ||| || |||||
Sbjct 534083 AAAGTGCCACGGCTCCAGGTACATGGCGAAGGCGCCGGGCCGCTTGTTGCCTCCCTGGTC 534142
Query 66499 GACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCC 66558
|||||||| || |||||| ||||||||| ||| || || || ||||| || |||||
Sbjct 534143 CACGTAGCGCGCCGTGTTGTTGTAGACACGCAGCATGGGCACCAGGCCGTTGGAGTTGCC 534202
Query 66559 ATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACC 66618
|||||||||| ||||| | || | || || | || || || || ||
Sbjct 534203 ATTGGTGCCGGCGATGTAGCTGCCAGTGGAACGGATGCAGCTGACCGCCACGCCGATGCC 534262
Query 66619 ACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGA 66678
||| |||| || |||||| ||||| | | || | | ||||| || |||
Sbjct 534263 ACCTGCCGATTTGGAGATGAGGGCACACTGCTTGAGCGTGTCGTAGATGCCATCGATGCT 534322
Query 66679 GTCACCCTTGATGGTCAGGAGGTAGCA--TGAACTA-AGTTGGGGTTTGGGTGTGGCGGC 66735
||| |||| |||| || ||| |||| || || | || | | ||| ||| | ||
Sbjct 534323 GTCGTCCTTCATGGCTAGCAGGAAGCAGCTGGACAACTGTGGCCGGTTG---GTGCCAGC 534379
Query 66736 CGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTA-ATGGC-GAGA-CATGTAATTGTACGT 66792
||| || ||||||| |||||||| || | | | || | || | ||||||||
Sbjct 534380 GTTGAAAAGAGTGGGTGAGGCGTGCGTGAACCATCTCTCTGAAAGCAGG---TTGTACGT 534436
Query 66793 CTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGGTA 66852
||| ||| | ||||| | | |||| || || || | || |||||||| | ||
Sbjct 534437 CTCAATGGCGGCATCCACGCGCGCGCCGTGGATGCCCACCGCCACCCGCATCAGCATGTG 534496
Query 66853 TTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTT 66912
|| || || || ||| | | ||||| | | | |||||||| |||||||||||
Sbjct 534497 CTGCGGGCGCTCTGCCACCTTGCCGTTGATCTTGAGCAGATAGGAGCGCTCCAGGGTCTT 534556
Query 66913 GATACCAAAG 66922
|| ||||||
Sbjct 534557 GAAGCCAAAG 534566
>seq1486
Length=661795
Score = 149 bits (164), Expect = 5e-31
Identities = 163/215 (76%), Gaps = 9/215 (4%)
Strand=Plus/Plus
Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315
|||| || ||| ||||||| || || ||| |||||||||| || |||||||||||||| |
Sbjct 352139 TGGAGCGCTTCACGCAGGAAGTTCAGGTGACGGAGGCGCGCTGCTTCTACGGCTTCCAAA 352198
Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375
| ||||||||||| ||||||||||||||||||| | |||||||| || ||||||| |
Sbjct 352199 TCGCCATGGAGAACATCCACTCGGAGATGTACAGCCTCCTCATCGACACCTACATCAAAG 352258
Query 61376 AGC-----GGGCGG-AAC---GTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGG 61426
| | | |||| || | ||| ||||||| |||||||| ||||| ||| |
Sbjct 352259 ACCCCAAAGAGCGGTCACTTAGAGAATACCTGTTCAACGCCATCGAAACGATGCCGTGTG 352318
Query 61427 TGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATC 61461
| ||| ||| || || ||||| |||| ||||||
Sbjct 352319 TCAAGAAGAAGGCCGACTGGGCGCTCAACTGGATC 352353
Score = 131 bits (144), Expect = 1e-25
Identities = 99/117 (85%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315
|||| || ||| ||||||| || || ||| |||||||||| || |||||||||||||| |
Sbjct 357808 TGGAGCGCTTCACGCAGGAAGTTCAGGTGACGGAGGCGCGCTGCTTCTACGGCTTCCAAA 357749
Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372
| ||||||||||| ||||||||||||||||||| | |||||||| || |||||||
Sbjct 357748 TCGCCATGGAGAACATCCACTCGGAGATGTACAGCCTCCTCATCGACACCTACATCA 357692
>seq354
Length=3526367
Score = 132 bits (146), Expect = 4e-26
Identities = 114/141 (81%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108
||||||||||||||| |||||||||| ||| ||| | ||||| || | ||||| ||
Sbjct 778858 GGTATACTCGACAATCTCGGTGCACAAATTGCTGGATTTGATGGTCCCGAGGTTCTGCTG 778917
Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168
|| ||||| | |||||| || |||||||||| ||||||||||||||| || ||| ||
Sbjct 778918 GTTGCTCTTCCCATTGCAAGCGTCCTTGTACAGCATGTACGGAGTGCCCGTTTCAGTCTG 778977
Query 66169 GGACTCAATGATGGCGTGCCA 66189
|||||| |||||||||| |||
Sbjct 778978 GGACTCGATGATGGCGTACCA 778998
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397386894979280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |