Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1148 315 6e-81 seq1486 149 5e-31 seq354 132 4e-26 >seq1148 Length=2189075 Score = 315 bits (348), Expect = 6e-81 Identities = 992/1510 (66%), Gaps = 59/1510 (4%) Strand=Plus/Plus Query 65432 TGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGAT 65491 |||||||||||||| || || | || || |||||| ||| | |||| ||| Sbjct 533097 TGGAACTCGCCGGAGAGCACCCTGCGTGTGTATATGTTGCTGGTGTACGCCTCAATGGAC 533156 Query 65492 TCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAG 65551 || ||||||| || || || ||||| || || || |||||||| || | || || | Sbjct 533157 TCGTTGTTGCCAAGGATCTGCGCAGTGGAGGCGGTGGGCATGGGCGCCAGCAGCAGGCTG 533216 Query 65552 TTTCGCAATCCGTTCATTTCAATGTTGT----GACGCAATTCGTCCCAGTTCCACATCGG 65607 |||| || |||| | | | || || | || | ||| |||| ||| ||||| ||| Sbjct 533217 TTTCTCACACCGTGCTTGGCGATCTTCTCCTTGA-GTAAT--GTCC-AGTCCCACAGCGG 533272 Query 65608 TTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGA 65667 ||| | |||| | | |||||| || | || ||| | || | ||| | || || Sbjct 533273 -----CGTGGGAATCCGCTG-CCACATGTCATACTGGAGGATCCCCTTGCTGACAGGAGA 533326 Query 65668 ACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGC 65727 || || | | ||||| || | ||| ||| || | ||||||| ||| || || Sbjct 533327 GCCCGGGTACGTCTCGTAGGGGCCGTGCTCAGCGGCCAGCTCGCAGCTGGCCTCCAGCGC 533386 Query 65728 GGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTA 65787 ||| | || | |||||||| || | ||| ||| | ||||| |||||| | Sbjct 533387 GGCGTAGTAGAGAGTCTCGAAGATCTGAATATTGAGTAGTTGCGCCTCGGGGCTCTCAAA 533446 Query 65788 CGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACG 65847 ||| | ||| || | || | ||||||||| || || || || || || ||||| || Sbjct 533447 GGGCTGCCGCATGAGAATGAAGGCGTCGGCCAGCCCCTGGACGCCGATGCCAATGGGCCG 533506 Query 65848 ATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCG 65907 || |||| ||||| || ||||||||| || |||||||| ||||| ||||| || | Sbjct 533507 GTGGCGCATGTTGGAGCGCTGCGCCTCAGGCACCGGGTAGTAGTTGATGTCGATGATCCT 533566 Query 65908 ATTCAAATTGCGTGTC-ACCACATGCACGATACGTCGCAA--TTGTTCGAAATCAAAATG 65964 || | || | || | | || | || | ||| | || || ||| || | || Sbjct 533567 GTTGAGGTT-CTTGACGATGACTTTGGTGACG-GCCGCCAGCTTCTT-GAAGTCGTA-TG 533622 Query 65965 TTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTT 66024 | || ||||| ||| || ||| ||| || || | || || ||||| Sbjct 533623 TG-----CGCTCGGGGGTGACGTACATG------TTG---AGCGCCACGGAGGCTAGGTT 533668 Query 66025 GCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCA 66084 ||| || || | |||||| | ||| || ||||| || || |||||||| || ||||| Sbjct 533669 GCACACGGCCACCTCGTCCTGGCTGGTGTATTCGACGATCTCCGTGCACAGGTTGCTGCA 533728 Query 66085 GCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCAT 66144 |||||||||| ||||| || || |||||||||||||||||||||||||| | ||| Sbjct 533729 CTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTGCGATTGCATGCATCCTTGTAGAGCAT 533788 Query 66145 GTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTT 66204 |||||| ||||| ||||| || ||||| |||||||||| ||| | | || || Sbjct 533789 GTACGGCGTGCCCGTCTCTGTCTGAGACTCGATGATGGCGTACCACACCTGCTGGGCTTT 533848 Query 66205 CACCGTACGT---ACC--GCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAG 66259 |||| || ||| ||||| |||| || || || ||| | || || Sbjct 533849 CACCACCCGCTTGACCCGGCCCT-CCTTC----TCATAGCGTGTGTACAAAGCCTCAAAC 533903 Query 66260 GATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCA 66319 |||||||| ||| ||| | || |||| | ||||||||| |||||||| || Sbjct 533904 TCATCACCCCAGCACTCGTCCAGGCCAGGGCACTCATTTGGACACATGAGCGACCAGTCC 533963 Query 66320 CCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCG 66379 | ||||| | ||| || ||||| || |||||||| || |||| || || Sbjct 533964 TGGTTGCTCTCTACCCTCTTCATGAACAGATCTGGGATCCAGAGACCGAAGAACAGGTCA 534023 Query 66380 CGTGCTCGTTGCTCCTCAATGCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTC 66438 || || || |||||||| |||| ||| || || || || ||||| || |||||||| Sbjct 534024 CGGGCGCGCTGCTCCTCTTTGCCTGTG-TTCTTCTTCAGCTCCAGGAAGTCGAAGATGTC 534082 Query 66439 GGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTC 66498 ||||| || |||||||| |||||||| | ||| || ||| ||| || ||||| Sbjct 534083 AAAGTGCCACGGCTCCAGGTACATGGCGAAGGCGCCGGGCCGCTTGTTGCCTCCCTGGTC 534142 Query 66499 GACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCC 66558 |||||||| || |||||| ||||||||| ||| || || || ||||| || ||||| Sbjct 534143 CACGTAGCGCGCCGTGTTGTTGTAGACACGCAGCATGGGCACCAGGCCGTTGGAGTTGCC 534202 Query 66559 ATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACC 66618 |||||||||| ||||| | || | || || | || || || || || Sbjct 534203 ATTGGTGCCGGCGATGTAGCTGCCAGTGGAACGGATGCAGCTGACCGCCACGCCGATGCC 534262 Query 66619 ACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGA 66678 ||| |||| || |||||| ||||| | | || | | ||||| || ||| Sbjct 534263 ACCTGCCGATTTGGAGATGAGGGCACACTGCTTGAGCGTGTCGTAGATGCCATCGATGCT 534322 Query 66679 GTCACCCTTGATGGTCAGGAGGTAGCA--TGAACTA-AGTTGGGGTTTGGGTGTGGCGGC 66735 ||| |||| |||| || ||| |||| || || | || | | ||| ||| | || Sbjct 534323 GTCGTCCTTCATGGCTAGCAGGAAGCAGCTGGACAACTGTGGCCGGTTG---GTGCCAGC 534379 Query 66736 CGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTA-ATGGC-GAGA-CATGTAATTGTACGT 66792 ||| || ||||||| |||||||| || | | | || | || | |||||||| Sbjct 534380 GTTGAAAAGAGTGGGTGAGGCGTGCGTGAACCATCTCTCTGAAAGCAGG---TTGTACGT 534436 Query 66793 CTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGGTA 66852 ||| ||| | ||||| | | |||| || || || | || |||||||| | || Sbjct 534437 CTCAATGGCGGCATCCACGCGCGCGCCGTGGATGCCCACCGCCACCCGCATCAGCATGTG 534496 Query 66853 TTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTT 66912 || || || || ||| | | ||||| | | | |||||||| ||||||||||| Sbjct 534497 CTGCGGGCGCTCTGCCACCTTGCCGTTGATCTTGAGCAGATAGGAGCGCTCCAGGGTCTT 534556 Query 66913 GATACCAAAG 66922 || |||||| Sbjct 534557 GAAGCCAAAG 534566 >seq1486 Length=661795 Score = 149 bits (164), Expect = 5e-31 Identities = 163/215 (76%), Gaps = 9/215 (4%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| ||||||| || || ||| |||||||||| || |||||||||||||| | Sbjct 352139 TGGAGCGCTTCACGCAGGAAGTTCAGGTGACGGAGGCGCGCTGCTTCTACGGCTTCCAAA 352198 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | ||||||||||| ||||||||||||||||||| | |||||||| || ||||||| | Sbjct 352199 TCGCCATGGAGAACATCCACTCGGAGATGTACAGCCTCCTCATCGACACCTACATCAAAG 352258 Query 61376 AGC-----GGGCGG-AAC---GTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGG 61426 | | | |||| || | ||| ||||||| |||||||| ||||| ||| | Sbjct 352259 ACCCCAAAGAGCGGTCACTTAGAGAATACCTGTTCAACGCCATCGAAACGATGCCGTGTG 352318 Query 61427 TGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATC 61461 | ||| ||| || || ||||| |||| |||||| Sbjct 352319 TCAAGAAGAAGGCCGACTGGGCGCTCAACTGGATC 352353 Score = 131 bits (144), Expect = 1e-25 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| ||||||| || || ||| |||||||||| || |||||||||||||| | Sbjct 357808 TGGAGCGCTTCACGCAGGAAGTTCAGGTGACGGAGGCGCGCTGCTTCTACGGCTTCCAAA 357749 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 | ||||||||||| ||||||||||||||||||| | |||||||| || ||||||| Sbjct 357748 TCGCCATGGAGAACATCCACTCGGAGATGTACAGCCTCCTCATCGACACCTACATCA 357692 >seq354 Length=3526367 Score = 132 bits (146), Expect = 4e-26 Identities = 114/141 (81%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||||||||||||||| |||||||||| ||| ||| | ||||| || | ||||| || Sbjct 778858 GGTATACTCGACAATCTCGGTGCACAAATTGCTGGATTTGATGGTCCCGAGGTTCTGCTG 778917 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| | |||||| || |||||||||| ||||||||||||||| || ||| || Sbjct 778918 GTTGCTCTTCCCATTGCAAGCGTCCTTGTACAGCATGTACGGAGTGCCCGTTTCAGTCTG 778977 Query 66169 GGACTCAATGATGGCGTGCCA 66189 |||||| |||||||||| ||| Sbjct 778978 GGACTCGATGATGGCGTACCA 778998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397386894979280