Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq227 116 2e-20 seq771 104 1e-16 seq3718 86.0 3e-11 >seq227 Length=1344502 Score = 116 bits (128), Expect = 2e-20 Identities = 123/159 (77%), Gaps = 6/159 (4%) Strand=Plus/Plus Query 448987 CTCGAGCAACATGGCGTAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTC 449046 ||||| || |||| || |||||||||||||||| || | |||||||| | | |||||| Sbjct 219571 CTCGATCAGCATGCCGATGGTCATGCGCGACGGGAAGCCGTGCGGGTTGAACAGGATGTC 219630 Query 449047 GGGCGTCTCGCCGGCCGCGTTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCCGTT--- 449103 ||| | |||| | || |||||||||||||||||| | | ||| ||||| | | Sbjct 219631 GGGGCTGAGGCCGCTCTCGCTGAAGGGCATGTCCTCGGCG--GGCCA-CAGGCGGCTCAG 219687 Query 449104 GACGCCCTTCTGGCCGTGGCGGCTGCAGAACTTGTCCCC 449142 || ||||||||||||||| |||||| ||||||||| || Sbjct 219688 GATGCCCTTCTGGCCGTGACGGCTGGCGAACTTGTCGCC 219726 >seq771 Length=839530 Score = 104 bits (114), Expect = 1e-16 Identities = 92/115 (80%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 349072 GGCGTCGAGAATCTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCC 349131 ||||| || |||||||||| | |||| |||||| || | |||| ||| ||| ||||| Sbjct 197786 GGCGTTGATGATCTCCTTGATGCGAGGCACGCCCAGAGTGATGTTCATGGACGCCACGCC 197845 Query 349132 GGCAAAGTGGAAGGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGG 349186 ||| ||||||||||||| ||||||| |||||| |||||| ||||||| |||| Sbjct 197846 GGCGAAGTGGAAGGTCTTCAGGGTCATCTGCGTCCCGGGCTCTCCGATGCTCTGG 197900 >seq3718 Length=3117880 Score = 86.0 bits (94), Expect = 3e-11 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 349084 CTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGGAA 349143 ||||||||| | ||||| ||| || |||||||||||||||| |||||||| ||||||| Sbjct 894345 CTCCTTGAGACGGGGCACGCCGAGCGTCACGTTCTTGGCCGACACGCCGGCGTAGTGGAA 894286 Query 349144 GGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCTAC 349203 ||| | | ||||| ||| ||| || || |||| |||| | || || ||| || Sbjct 894285 GGTGTTCAAGGTCATCTGAGTGGCCGGTTCTCCGAGAGACTGAGCGGCTAGCGCGCCGAC 894226 Query 349204 CATCTCGCCGGG 349215 ||| || || || Sbjct 894225 CATTTCACCCGG 894214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2083716482975846