Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08]
37,377 sequences; 493,775,940 total letters
Query= NC_027867.1
Length=651523
Score E
Sequences producing significant alignments: (Bits) Value
seq227 116 2e-20
seq771 104 1e-16
seq3718 86.0 3e-11
>seq227
Length=1344502
Score = 116 bits (128), Expect = 2e-20
Identities = 123/159 (77%), Gaps = 6/159 (4%)
Strand=Plus/Plus
Query 448987 CTCGAGCAACATGGCGTAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTC 449046
||||| || |||| || |||||||||||||||| || | |||||||| | | ||||||
Sbjct 219571 CTCGATCAGCATGCCGATGGTCATGCGCGACGGGAAGCCGTGCGGGTTGAACAGGATGTC 219630
Query 449047 GGGCGTCTCGCCGGCCGCGTTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCCGTT--- 449103
||| | |||| | || |||||||||||||||||| | | ||| ||||| | |
Sbjct 219631 GGGGCTGAGGCCGCTCTCGCTGAAGGGCATGTCCTCGGCG--GGCCA-CAGGCGGCTCAG 219687
Query 449104 GACGCCCTTCTGGCCGTGGCGGCTGCAGAACTTGTCCCC 449142
|| ||||||||||||||| |||||| ||||||||| ||
Sbjct 219688 GATGCCCTTCTGGCCGTGACGGCTGGCGAACTTGTCGCC 219726
>seq771
Length=839530
Score = 104 bits (114), Expect = 1e-16
Identities = 92/115 (80%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 349072 GGCGTCGAGAATCTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCC 349131
||||| || |||||||||| | |||| |||||| || | |||| ||| ||| |||||
Sbjct 197786 GGCGTTGATGATCTCCTTGATGCGAGGCACGCCCAGAGTGATGTTCATGGACGCCACGCC 197845
Query 349132 GGCAAAGTGGAAGGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGG 349186
||| ||||||||||||| ||||||| |||||| |||||| ||||||| ||||
Sbjct 197846 GGCGAAGTGGAAGGTCTTCAGGGTCATCTGCGTCCCGGGCTCTCCGATGCTCTGG 197900
>seq3718
Length=3117880
Score = 86.0 bits (94), Expect = 3e-11
Identities = 98/132 (74%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 349084 CTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGGAA 349143
||||||||| | ||||| ||| || |||||||||||||||| |||||||| |||||||
Sbjct 894345 CTCCTTGAGACGGGGCACGCCGAGCGTCACGTTCTTGGCCGACACGCCGGCGTAGTGGAA 894286
Query 349144 GGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCTAC 349203
||| | | ||||| ||| ||| || || |||| |||| | || || ||| ||
Sbjct 894285 GGTGTTCAAGGTCATCTGAGTGGCCGGTTCTCCGAGAGACTGAGCGGCTAGCGCGCCGAC 894226
Query 349204 CATCTCGCCGGG 349215
||| || || ||
Sbjct 894225 CATTTCACCCGG 894214
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2083716482975846
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |