Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq6 147 3e-33 seq3 125 1e-26 seq7 114 2e-23 seq22 89.7 8e-16 >seq6 Length=32139338 Score = 147 bits (162), Expect = 3e-33 Identities = 176/234 (75%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||| | ||||| ||||| ||| |||||| |||||| | Sbjct 8681101 GTACAAAGGGCAGGGACTTAATCAACACAAGCTT-ATGACCCGCACTTACTGGGAATT-C 8681158 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG-ATGAAATTTCAAAGATT 119 |||||| | | || ||||||||| | ||| |||||| ||| || |||| Sbjct 8681159 CTCGTTCATGGGGAATAATTGCAATCCCCAGTCCGAATCACGGATGTGGTTCAGCGGATT 8681218 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| ||||| ||| | || || ||| |||| ||| |||| || || Sbjct 8681219 ACCCGCACCTCTCGGCATAGGGTAGGCACACGCTGATCCAATCATTGTGGCGCACGGGCA 8681278 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||| | || |||||| Sbjct 8681279 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCCATCTCACGTGGC 8681331 >seq3 Length=35853109 Score = 125 bits (138), Expect = 1e-26 Identities = 168/231 (73%), Gaps = 11/231 (5%) Strand=Plus/Minus Query 4 CAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTC 63 ||| |||||||||| || | |||| ||||| |||||||||| |||||| |||| Sbjct 23133007 CAATGGGCAGGGACTTAAT--------GCTT-ATGACCCGCGCTTACTGGGAATT-CCTC 23132958 Query 64 GTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATTACC 122 ||| | | || ||||||||| | |||||||||||| |||| |||||||| Sbjct 23132957 GTTCATGGGGAATAATTGCAATCCCCAGTCCCCATCACGAATGGGGTTCAGCAGATTACC 23132898 Query 123 CGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCC 182 || ||| ||||| ||| | || || ||| | | ||| |||||||||| ||| Sbjct 23132897 CGCTCCTCTCGGCATAGGGTAGGCACACGCTGATCCGACCTTTGTGGCGCGCGTGCAGCC 23132838 Query 183 CAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 | | ||||||||||||||||||||||||||| ||| | | ||| |||||| Sbjct 23132837 CTGGACATCTAAGGGCATCACAGACCTGTTACTGCTCCCATCTTGCGTGGC 23132787 >seq7 Length=31027439 Score = 114 bits (126), Expect = 2e-23 Identities = 160/219 (73%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||| ||||||||| || || ||| | |||| ||||| || ||||||| |||||| | Sbjct 25148693 GTACAAATGGCAGGGACTTAATCGACGTGCGCTT-ATGACCCGTGCTTACTGGGAATT-C 25148750 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAG-ATT 119 ||||| | | || ||||||||| | |||| ||||||| |||| | ||| Sbjct 25148751 CTCGTCCATGGGGAATAATTGCAATCCCCAGTCCCAATCACGAATGGGGTTCAGCGGATT 25148810 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| ||||| ||| | || || ||| | || || ||||| |||| Sbjct 25148811 ACCCGCACCTCTCGGCGTAGGGTAGGCACACGCTGATCCGACCATCGTGGCGCGTGTGCA 25148870 Query 180 GCCCAGAACATCTAA-GGGCATCACAGACCTGTTATTGC 217 || | | | |||||| ||||||||||||||||||||||| Sbjct 25148871 GCACCGGAAATCTAAAGGGCATCACAGACCTGTTATTGC 25148909 >seq22 Length=19874160 Score = 89.7 bits (98), Expect = 8e-16 Identities = 137/189 (72%), Gaps = 6/189 (3%) Strand=Plus/Minus Query 32 CTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTA 91 |||||| | ||||||||| |||||| ||||||| | | || ||||||||| | Sbjct 7781989 CTTGATCAACAGCGCTTACTGGGAATT-CCTCGTTCATGGGGAATAATTGCAATCCACAG 7781931 Query 92 TCCCCATCACGATGAAATTTCAAAG-ATTACCCGGACCTGTCGGCCAAGGTGATAG--AC 148 |||| ||||||| |||| | ||||| || ||| ||||| || || ||| || Sbjct 7781930 TCCCAATCACGAATGGGGTTCAGTGGATTACTCGCGCCTCTCGGCGTAG-TG-TAGGCAC 7781873 Query 149 TCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACC 208 || ||| | | ||| |||||| ||| |||| | ||||||||| |||||||||||| Sbjct 7781872 ACGCTGATCCGACAATTGTGGCGCGCATGCAGCCCCGGACATCTAAGAGCATCACAGACC 7781813 Query 209 TGTTATTGC 217 ||||||||| Sbjct 7781812 TGTTATTGC 7781804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751931950815