Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq18 125 1e-26 seq8 109 1e-21 seq14 93.3 8e-17 >seq18 Length=24512808 Score = 125 bits (138), Expect = 1e-26 Identities = 176/246 (72%), Gaps = 17/246 (7%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT------TTGCTCGAATACATTAG 127 |||||||||||||| || ||||||||||||| |||| | || |||||| | || Sbjct 10091285 TTTACTTTGAAAAATTTTGAGTGTTCAAAGCGGGCCACCCAACTCGCCTGAATACCTGAG 10091344 Query 128 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAAT 187 | |||||||| |||||| ||||||||||| ||||| | | ||| | || Sbjct 10091345 CTAGGAATAATGGAATAG---------TTCTATTTTGTGGGTTTTTGGAACCAGGGCCAT 10091395 Query 188 GATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247 |||||| ||||| | ||||| || ||||| | |||||||||||||||||| Sbjct 10091396 GATTAAGAGGGACTGCCGGGGCATTC-GTATTGCGCCGCTAGAGGTGAAATTCTTGGACC 10091454 Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACG 307 ||||| || | || ||||| || |||||| |||||||||||||||| ||| | Sbjct 10091455 GGCGCAAGACGGACGAAAGCAAAAGCATTTACCAAGAATGTTTTCATTAATCA-AGAATG 10091513 Query 308 AAAGTT 313 |||||| Sbjct 10091514 AAAGTT 10091519 >seq8 Length=30410158 Score = 109 bits (120), Expect = 1e-21 Identities = 134/181 (74%), Gaps = 18/181 (10%) Strand=Plus/Plus Query 35 CCGCATGCCCTTCACTGGGTGTGCCGG---------GGAGCCAGGA-CTTTTACTTTGAA 84 ||| |||||||| |||||||| |||| |||||| || | ||||||||||| Sbjct 26686169 CCGGATGCCCTTGGCTGGGTGT-CCGGTCCCTTGCAGGAGCCCGGGGCATTTACTTTGAA 26686227 Query 85 AAAATTAGAGTGTTCAAAGCAGGCC------TTTGCTCGAATACATTAGCATGGAATAAT 138 ||||||||||| ||||||||||||| | || |||||| | ||| |||||||| Sbjct 26686228 AAAATTAGAGTCTTCAAAGCAGGCCGCCCAACTCGCCAGAATACCTGAGCTAGGAATAAT 26686287 Query 139 AGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGG 198 ||||| ||| | |||||||||||||| ||||| || ||| | ||||| || |||| Sbjct 26686288 GGAATATGAC-TCCGGTTCTATTTTGTGGGTTTTCAGAACCAGGGCCATGATCAAGAGGG 26686346 Query 199 A 199 | Sbjct 26686347 A 26686347 >seq14 Length=26699778 Score = 93.3 bits (102), Expect = 8e-17 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 117 GAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGG 176 |||||| | ||| | ||||||| |||||||| | ||||||||||| ||||| || Sbjct 3406263 GAATACCTGAGCTAGAAATAATAAAATAGGACCC-CAATTCTATTTTGTGGGTTTTCAGA 3406321 Query 177 ACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAA 236 ||| | |||||||| ||||| |||||| || ||||| | ||||||||| Sbjct 3406322 ACCAGGGCCATGATTAAGAGGGACGCCCGGGGGCGTTCGTATTGCAGCACTAGAGGTGAA 3406381 Query 237 ATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTA 296 ||||||||| ||| || | ||||||| || ||||| |||||||||||| Sbjct 3406382 ATTCTTGGACCGGCACGAGATGGACGAAAACGAAAGCATTTGCCAAGAATGTTTTCATTA 3406441 Query 297 ATCAGTGAACGAAAGTTA 314 |||| ||| |||||||| Sbjct 3406442 ATCA-AGAAGGAAAGTTA 3406458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915114511168