Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq17 152 2e-34 seq3 114 5e-23 seq10 109 2e-21 seq8 96.9 1e-17 seq21 93.3 2e-16 seq19 78.8 4e-12 >seq17 Length=25916894 Score = 152 bits (168), Expect = 2e-34 Identities = 104/117 (89%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 ||| |||||||||||||||||||||||| | |||| |||||||||||||||||||||| Sbjct 10264055 TGGTACCCGAAAGATGGTGAACTATGCCCGGGCAGGGCGAAGCCAGAGGAAACTCTGGTG 10264114 Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||| ||||||||| ||| ||||||||||| ||||| || ||||||||||||||| Sbjct 10264115 GAGGCCCGCAGCGGTCCTGACGTGCAAATCGGTCGTCCAACCTGGGTATAGGGGCGA 10264171 >seq3 Length=35853109 Score = 114 bits (126), Expect = 5e-23 Identities = 93/113 (82%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 571 ACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGG 630 ||||||||||||||| |||||||| | | || |||||||||||||| |||||||||| Sbjct 23134474 ACCCGAAAGATGGTGGACTATGCCCGGGCAAGGCAAAGCCAGAGGAAACCCTGGTGGAGG 23134533 Query 631 CTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | ||||||||| ||| | ||||||||| || || | |||||||| |||||| Sbjct 23134534 CACGCAGCGGTCCTGACATGCAAATCGGTCATCTGACCTGGGTATATGGGCGA 23134586 Score = 80.6 bits (88), Expect = 1e-12 Identities = 101/135 (75%), Gaps = 9/135 (7%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || || |||||| | | ||||| ||||||| Sbjct 23133656 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCAGGTGGTAAACTCCATCTAAGGCTAAAT 23133715 Query 100 ATTGGCCAGAGAC-CGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 | |||| ||| ||||| | ||||||| || | ||||| |||||| |||||| Sbjct 23133716 A----CCAG-GACGAGATAGTGAACAAGTACGGTAAGGGAAAGTTGAAAATAACTTTG-- 23133768 Query 159 AAGAGAGTTAAAAAG 173 |||||||| || || Sbjct 23133769 -AGAGAGTTCAACAG 23133782 >seq10 Length=29046025 Score = 109 bits (120), Expect = 2e-21 Identities = 97/120 (81%), Gaps = 1/120 (1%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 || ||| ||| |||||||||||||||||||| ||| || ||||||||||||||| Sbjct 23413352 TGATGGTACCTGAAAGATGGTGAACTATGCCCTGGCAGGACAAACCCAGAGGAAACTCTG 23413411 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || ||||| |||||||| ||| ||||||||||| || || || ||||||| ||||||| Sbjct 23413412 GTAGAGGCCTGCAGCGGTCCTGACGTGCAAATCGGTCATCCGATCTGGGTAT-GGGGCGA 23413470 >seq8 Length=30410158 Score = 96.9 bits (106), Expect = 1e-17 Identities = 72/83 (87%), Gaps = 1/83 (1%) Strand=Plus/Minus Query 600 AGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCT-CGCAGCGGTTCTGGCGTGCAAATCGA 658 |||| |||| ||||||||||||||||||||| | ||||||||| ||| | ||||||||| Sbjct 30401313 AGGGCGAAGACAGAGGAAACTCTGGTGGAGGGTTCGCAGCGGTCCTGACATGCAAATCGG 30401254 Query 659 TCGTCAAATTTGGGTATAGGGGC 681 ||||| | |||||||||||||| Sbjct 30401253 TCGTCCGACTTGGGTATAGGGGC 30401231 >seq21 Length=20987006 Score = 93.3 bits (102), Expect = 2e-16 Identities = 94/120 (78%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 52 TTGGGAATGCAGCTCTAAA-TGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAG 110 ||||||||||||| ||||| |||| |||||| | | ||||| | |||||| |||| || Sbjct 5143037 TTGGGAATGCAGC-CTAAAGTGGGTGGTAAACTCCGTCTAAGGTTAAATACCGGCCCGAA 5143095 Query 111 ACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAA 170 || ||| | | ||||||| || | ||||| ||||||| |||||| | |||||||| || Sbjct 5143096 ACTGATGGTGAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAGAGAGAGTTCAA 5143155 >seq19 Length=24127165 Score = 78.8 bits (86), Expect = 4e-12 Identities = 115/164 (70%), Gaps = 8/164 (5%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || || |||||| | | ||||| ||||||| Sbjct 4774384 GAGTCGGGTTGCTTGGGAATGCAGCCCAAACCAGGTGGTAAACTCCATCTAAGGCTAAAT 4774325 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | || ||||| ||| |||| | | ||||| ||||||| |||||| | Sbjct 4774324 ACCAGCATGAGACTGAT--------AGTACCATAAGGGAAAGTTGAAAAGAACTTTGAAG 4774273 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTG 203 |||||||| || || |||||| || | ||| || || ||| Sbjct 4774272 AGAGAGTTCAACAGGGAGTGAAACCATTAAGAGGTAAACGGTTG 4774229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079799635550