Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= AAMG01000750.1 Length=102 Score E Sequences producing significant alignments: (Bits) Value seq3 114 6e-24 seq21 105 3e-21 seq19 93.3 2e-17 >seq3 Length=35853109 Score = 114 bits (126), Expect = 6e-24 Identities = 88/103 (85%), Gaps = 1/103 (1%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||||||||||||||||||| ||||||||||| ||||| ||| |||||| Sbjct 23133430 GGAAAAGAAACTAACCAGGATTCCCTCAGTAGCGGCGAGTGAAGAGGGATGAGACCAGCG 23133489 Query 61 CCGAAT-CCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 |||||| ||||||| | | || | |||| |||||||||| Sbjct 23133490 CCGAATCCCCCGCCTCCTCGCGGACCTGGGGAAATGTGGCGTA 23133532 >seq21 Length=20987006 Score = 105 bits (116), Expect = 3e-21 Identities = 87/102 (85%), Gaps = 3/102 (3%) Strand=Plus/Plus Query 3 AAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCGCC 62 ||||||||||||||||||||||||||||| |||||| |||| | |||||||||||| ||| Sbjct 5143288 AAAAGAAACTAACCAGGATTCCCTCAGTAGCGGCGATTGAAGAAGGAAGAGCCCAGTGCC 5143347 Query 63 GAAT-CCCCGCCCCGCGGTGGGGCGCGG-GACATGTGGCGTA 102 |||| ||||| ||| || |||| ||| || |||||| ||| Sbjct 5143348 GAATCCCCCGTCCCCTCGT-GGGCACGGTGAAATGTGGTGTA 5143388 >seq19 Length=24127165 Score = 93.3 bits (102), Expect = 2e-17 Identities = 85/102 (83%), Gaps = 9/102 (9%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||||||||||||||||||| | | ||| ||| |||||||||| ||||| Sbjct 4774594 GGAAAAGAAACTAACCAGGATTCCCTCAGTAGCAG-GAGCGAAGAGGGAAGAGCTCAGCG 4774536 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 ||| ||||| | ||| || ||| |||| |||||||||| Sbjct 4774535 CCG--TCCCC-CTCCG----GGCGCG-GGGAAATGTGGCGTA 4774502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230379823440