Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq6 215 8e-54 seq3 205 1e-50 seq1 188 1e-45 seq13 187 4e-45 seq29 131 3e-28 seq20 104 4e-20 seq22 91.5 2e-16 >seq6 Length=32139338 Score = 215 bits (238), Expect = 8e-54 Identities = 199/250 (80%), Gaps = 13/250 (5%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||| ||| |||| || || |||| | ||||||||||||||||||||||||||||||| || Sbjct 8681260 TCATTGTGGCGCACGGGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TC 8681318 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCG 135 | || | | ||||| | ||| | |||| ||||||||| | |||||| || Sbjct 8681319 CATCTCACGT-GGCTGAACACCACTTGTCCATCTAAGAAGTTGGATGCCAACCG----CG 8681373 Query 136 ATGGGGC-------TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188 | ||| | ||||||||| | |||| ||||||||||||||||||||||||| Sbjct 8681374 AGGGGCCGTGTAAATATTTAGCATGCCGGAGTCTGGTTCGTTATCGGAATTAACCAGACA 8681433 Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248 |||| |||||| ||||||||||||||||||||||||||||| |||||| ||||||||||| Sbjct 8681434 AATCGCTCCACTAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTA 8681493 Query 249 TCAATCTGTC 258 |||||||||| Sbjct 8681494 TCAATCTGTC 8681503 Score = 87.8 bits (96), Expect = 3e-15 Identities = 70/84 (83%), Gaps = 4/84 (5%) Strand=Plus/Plus Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCA----TAGAA 234 |||||||| ||||| || ||| |||||| |||||| ||||||||||||||| |||| Sbjct 41546 TAACCAGATAAATCGCTTCACAAACTAAAAACGGCTATGCACCACCACCCACATGGAGAA 41605 Query 235 TCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||| |||| || Sbjct 41606 CCAAGAAAGAGCTATCGATCTATC 41629 >seq3 Length=35853109 Score = 205 bits (226), Expect = 1e-50 Identities = 191/241 (79%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 20 TGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAAC 79 ||| |||||||||| |||| | ||||||||||||||||||||||||||| ||| | | | Sbjct 23132855 TGTGGCGCGCGTGCAGCCCTGGACATCTAAGGGCATCACAGACCTGTTACTGCTCCCATC 23132796 Query 80 TTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCC---AGCCACCAACCATAGTCGA 136 || | | ||||| | |||| | |||||||| ||||| | || | | | | | Sbjct 23132795 TTGCGT-GGCTGAACGCCACTTGTCCCTCTCAGAAGTTGAAATCCGACTGCAAGGGGCCG 23132737 Query 137 TGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTC 196 | |||||||||| | ||||||||||||| | ||||||||||||||||| ||| Sbjct 23132736 CGTAACTATTTAGCATGGAGGAGTCTCGTTCGTTAACAGAATTAACCAGACAAATTGCTC 23132677 Query 197 CACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTG 256 ||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||| Sbjct 23132676 CACCAACTAAGAACGGCGATGCACCACCACCCACAGAATCTAGAAAGAGCTATCAATCTG 23132617 Query 257 T 257 | Sbjct 23132616 T 23132616 >seq1 Length=37510255 Score = 188 bits (208), Expect = 1e-45 Identities = 185/238 (78%), Gaps = 13/238 (5%) Strand=Plus/Plus Query 24 GCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 83 ||| |||||| |||| | |||||||||||||||||||||||||||| |||| Sbjct 29102324 GCGTGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTAT---CTCACG----- 29102375 Query 84 ATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGATGGGG-- 141 |||||| ||| || ||||||||||| || | || ||| | | | | Sbjct 29102376 --TGGCTGACCACCACCTGTTCCTCTAAGAAGTTAGACGCCGACCGCAAGGGGCCGCGTA 29102433 Query 142 -CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200 ||||||| || | | |||||||||||||||||||||||||||||||||| ||||| | Sbjct 29102434 ACTATTTAACATGCTGGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCATC 29102493 Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||||||||||||| |||||| ||| |||||||||||| |||| Sbjct 29102494 AACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGACAGAGCTATCAATGTGTC 29102551 >seq13 Length=27425808 Score = 187 bits (206), Expect = 4e-45 Identities = 187/238 (79%), Gaps = 6/238 (3%) Strand=Plus/Plus Query 24 GCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 83 ||| |||||| ||| | |||||||||||||||||||| ||||||| || || | || | Sbjct 20764672 GCGTGCGTGCAGCCACGGACATCTAAGGGCATCACAGAACTGTTATAGC-TCCATCTCGC 20764730 Query 84 ATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACC---ATAGTCGATGGG 140 | ||||| | ||| | |||||||||||||| | || || | | | | || Sbjct 20764731 GT-GGCTGAACACCACTTGTCCCTCTAAGAAGTTGGACATCATCTGCGAGGGGCCGTGTA 20764789 Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200 ||||||| || | | |||| |||||||||||||||||||||||||||| ||||||| Sbjct 20764790 ACTATTTATCATATCAGAATCTCATTCGTTATCGGAATTAACCAGACAAATCGCTCCACC 20764849 Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||| || |||||||||||||| |||||| ||||||||||||||||||||| Sbjct 20764850 AACTAAGAAC-TCCTTGCACCACCACCCAAAGAATCGAGAAAGAGCTATCAATCTGTC 20764906 >seq29 Length=15256605 Score = 131 bits (144), Expect = 3e-28 Identities = 89/100 (89%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 |||| ||||||||||| ||||||||||||| ||| |||| |||||||||||||||||||| Sbjct 11578600 GTCTTGTTCGTTATCGAAATTAACCAGACAGATCGCTCCGCCAACTAAGAACGGCCATGC 11578659 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||| ||| |||||| | |||| |||||||| ||||| Sbjct 11578660 ACCACCAACCACAGAATCGACAAAGTGCTATCAACCTGTC 11578699 >seq20 Length=22470590 Score = 104 bits (114), Expect = 4e-20 Identities = 131/174 (75%), Gaps = 12/174 (7%) Strand=Plus/Plus Query 37 CCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTG-GAAG 95 || |||||||||||||||||||||||||||||||| ||| | || || |||||| | Sbjct 11481823 CCTGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCCACCTCTCA-TGGCTGACACA 11481880 Query 96 CCAATAGTCCCTCTAAGAAG--CCAGCCACCAACCATAGTCGATG--GGGCTATTTAGCA 151 ||| | |||||||||||||| || | | ||| | || |||||||||| Sbjct 11481881 CCACTTGTCCCTCTAAGAAGTTGTAGACTGC-----TAGGGGCTGCATAACTATTTAGCA 11481935 Query 152 GGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTA 205 | |||||||| ||||| || |||||||||||||||| |||||||||||| Sbjct 11481936 TGCCGGTGTCTCGTTTGTTATTGGCATTAACCAGACAAATCGCTCCACCAACTA 11481989 Score = 82.4 bits (90), Expect = 1e-13 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 196 CCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCT 255 |||| ||||||||| ||||||||| ||||||||| ||||| ||||||| |||||||||| Sbjct 11482955 CCACTAACTAAGAAAGGCCATGCATCACCACCCAAAGAATTGAGAAAGACCTATCAATCT 11483014 Query 256 GTC 258 ||| Sbjct 11483015 GTC 11483017 >seq22 Length=19874160 Score = 91.5 bits (100), Expect = 2e-16 Identities = 80/97 (82%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 20 TGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAAC 79 ||| |||||| ||| |||| | ||||||||| |||||||||||||||||||| ||| | | Sbjct 7781856 TGTGGCGCGCATGCAGCCCCGGACATCTAAGAGCATCACAGACCTGTTATTG-CTCCATC 7781798 Query 80 TTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC 116 | || || ||| | |||| | ||||||||||||||| Sbjct 7781797 TCGCA-TGACTGCACGCCACTCGTCCCTCTAAGAAGC 7781762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796727896821