Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq6 149 1e-33 seq3 141 2e-31 seq7 129 1e-27 seq22 109 1e-21 seq29 105 1e-20 seq20 102 2e-19 >seq6 Length=32139338 Score = 149 bits (164), Expect = 1e-33 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 ||||||||||||||||||||||||||||||| | |||| || || |||| ||| ||| | Sbjct 8681316 GCAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCCCGTGCGCCACAATGATTG 8681257 Query 174 AGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTG 233 || || || | | ||| |||| |||| |||||||| | || | | |||| Sbjct 8681256 GATCAGCGTGTGCCTACCCTATGCCGAGAGGTGCGGGTAATCCGCTGAACCACATCCGTG 8681197 Query 234 CTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTC 293 | ||| | | |||||||||||| | | | |||||||||| || |||||| ||| ||| Sbjct 8681196 ATTCGGACTGGGGATTGCAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTC 8681137 Query 294 ATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 || ||| | |||||||| |||||||||||||||| Sbjct 8681136 ATAAGCTTGTGTTGATTAAGTCCCTGCCCTTTGTA 8681102 >seq3 Length=35853109 Score = 141 bits (156), Expect = 2e-31 Identities = 186/256 (73%), Gaps = 10/256 (4%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||| |||||||| | ||| | |||| | | ||| | | ||| ||||||||||||| Sbjct 23132761 CTTCTGAGAGGGACAAGTGGCGTTCAGCC-ACGCAAGATGGGAGCAGTAACAGGTCTGTG 23132819 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||||||| ||| | | || || || | | Sbjct 23132820 ATGCCCTTAGATGTCCAGGGCTGCACGCGCGCCACAAAGGTCGGATCAGCGTGTGCCTAC 23132879 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| |||| ||| ||||||||| | || | | ||||| |||||| | | |||| Sbjct 23132880 CCTATGCCGAGAGGAGCGGGTAATCTGCTGAACCCCATTCGTGATGGGGACTGGGGATTG 23132939 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||||||| ||||| ||| ||| Sbjct 23132940 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGCGCGGGTCATAAGC--------ATT 23132991 Query 311 ACGTCCCTGCCCTTTG 326 | |||||||||| ||| Sbjct 23132992 AAGTCCCTGCCCATTG 23133007 >seq7 Length=31027439 Score = 129 bits (142), Expect = 1e-27 Identities = 159/216 (74%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 114 GCAATAACAGGTCTGTGATGCCCTT-AGATGTTCTGGGCCGCACGCGCGCTACACTGACA 172 ||||||||||||||||||||||||| |||| | | | || |||| ||||| || || Sbjct 25148909 GCAATAACAGGTCTGTGATGCCCTTTAGATTTCCGGTGCTGCACACGCGCCACGATGGTC 25148850 Query 173 GAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGT 232 | || || || | | ||| |||| |||| |||||||| | || | | |||| Sbjct 25148849 GGATCAGCGTGTGCCTACCCTACGCCGAGAGGTGCGGGTAATCCGCTGAACCCCATTCGT 25148790 Query 233 GCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGT 292 | | |||| | | |||||||||||| | | | ||||||||| || ||||||| || || Sbjct 25148789 GATTGGGACTGGGGATTGCAATTATTCCCCATGGACGAGGAATTCCCAGTAAGCACGGGT 25148730 Query 293 CATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||| ||| | ||| ||||| ||||||||| |||||| Sbjct 25148729 CATAAGCGCACGTCGATTAAGTCCCTGCCATTTGTA 25148694 >seq22 Length=19874160 Score = 109 bits (120), Expect = 1e-21 Identities = 160/220 (73%), Gaps = 5/220 (2%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 ||||||||||||||| | ||| | || | ||| || | ||| ||||||||||||||| Sbjct 7781762 GCTTCTTAGAGGGACGAGTGGCGTGCAGTC-ATGCGAGATGGAG-CAATAACAGGTCTGT 7781819 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC-ACTGACAGAGCCAACGAGTTCAT 188 ||||| ||||||||| | |||| ||| |||||| || | || | || || || || | | Sbjct 7781820 GATGCTCTTAGATGTCCGGGGCTGCATGCGCGCCACAATTGTCGGA-TCAGCGTGTGCCT 7781878 Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 || |||| ||| | |||||| | || | | ||||| | |||| | | || Sbjct 7781879 ACACTACGCCGAGAGGCGCGAGTAATCCACTGAACCCCATTCGTGATTGGGACTGTGGAT 7781938 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288 |||||||||| | | | |||||||||| || ||||||||| Sbjct 7781939 TGCAATTATTCCCCATGAACGAGGAATTCCCAGTAAGCGC 7781978 >seq29 Length=15256605 Score = 105 bits (116), Expect = 1e-20 Identities = 154/216 (71%), Gaps = 9/216 (4%) Strand=Plus/Minus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACA-CTGACA 172 ||||||||||||||||||||||||||||| | | |||| || | |||| ||| | | || Sbjct 11578545 GCAATAACAGGTCTGTGATGCCCTTAGATATCCGGGGCTGCCCACGCGGCACAACGGTCA 11578486 Query 173 GAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGT 232 | | | || || | | ||| |||| |||| | | |||| |||| | | | Sbjct 11578485 TATC-AGCGTGTGCTTACCCTAAGCCGAGAGGTGCGAGCAATCCGCAGAAACCCGTTTGC 11578427 Query 233 GCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGT 292 | | ||| | |||||||||| | | | ||| |||||| || |||||||||| || Sbjct 11578426 GATTGGGTT-------TGCAATTATTCCCCATGAACAAGGAATTCCCAGTAAGCGCGGGT 11578374 Query 293 CATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||| ||| ||| ||||||| |||||| |||||||| Sbjct 11578373 CATAAGCTCGCATTGATTAAATCCCTGGCCTTTGTA 11578338 >seq20 Length=22470590 Score = 102 bits (112), Expect = 2e-19 Identities = 179/254 (70%), Gaps = 14/254 (6%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC---TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 |||||||||||||| | || ||| ||| ||| || | ||| |||||||||||||| Sbjct 11481900 CTTCTTAGAGGGACAAGTGGTGTGTCA-GCC-ATGAGAGGTGGAG-CAATAACAGGTCTG 11481844 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCAC-GCGCGCTACACTGACAGAGCCAACGAGTTCA 187 |||||||||||||||||| || | | | ||| || ||| | | | | | | Sbjct 11481843 TGATGCCCTTAGATGTTCAGGTCGGATCAGCGTGC----CTGCCCAGGTC---GTATGCC 11481791 Query 188 TCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCA 247 | ||| ||| | || ||||||| | | || | | ||||| | |||| | | | Sbjct 11481790 TACCCTATGCCAAGAAGTGTGGGTAAGCCGCTGAACCCCATTCGTGATTGGGACTGGGGA 11481731 Query 248 TTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTG 307 ||||||||||| | ||| || ||||||| || ||||||| | || || ||| |||||| Sbjct 11481730 TTGCAATTATTCCCCTTGAATGAGGAATTCCCAGTAAGCACAGGTAATAAGCTTGCGTTG 11481671 Query 308 ATTACGTCCCTGCC 321 |||| ||||||||| Sbjct 11481670 ATTATGTCCCTGCC 11481657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947111522048