Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq11 297 6e-78 seq25 183 1e-43 seq8 143 9e-32 seq19 98.7 3e-18 seq23 91.5 5e-16 seq10 91.5 5e-16 seq28 82.4 2e-13 >seq11 Length=28208075 Score = 297 bits (328), Expect = 6e-78 Identities = 345/467 (74%), Gaps = 45/467 (10%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| |||||||| |||| ||||||| |||| ||| ||||||||||||||| ||| | Sbjct 5360770 CTTCTGCTCTACGGGAGGTTTCTGTCCTCCCAGAGCTTGCCTTAGGACACCTGCATTACG 5360711 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCA------------ 114 ||| |||| ||| || ||||| |||||| ||||||| || |||| Sbjct 5360710 CTTTGACAGGTGTACCATCCCAGTCAAACTTTCCACCTGCCACTGTCCCTGGAGTGGGTC 5360651 Query 115 ---TCAACCCGG--ATCGGC-----CCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTG 164 || || || | ||| ||| | ||| | | ||||||| || | | Sbjct 5360650 GCCTCCCCCGGGTGACCGGGGGCTGCCGGGGAGGGGTTGGAAGCCAGAA----GTGAGAG 5360595 Query 165 AAGACCAGT-------TCC--GCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGT 215 ||| | ||| || |||||| | ||| | ||| |||||| |||||||| Sbjct 5360594 CCCACCGGGGCTCGCCTCCCTGCCTCATTGGGTTAGTGAGGAAATGATAAGAGTAGTGGT 5360535 Query 216 ATTTCACTTGCGCC--------GAAACGG--CTCCCACTTATTCTACACCTCTCAAGTCA 265 |||||||| || | || || ||||||||||||||||||| |||| ||| Sbjct 5360534 ATTTCACTGACGGCTCCCGGCGGAGTGGGGTCTCCCACTTATTCTACACCCCTCATGTCT 5360475 Query 266 TTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCC 325 |||||| | | |||||||||||||||||||| ||||||||||||| |||||||| ||| Sbjct 5360474 CTTCACAGTGCCAGACTAGAGTCAAGCTCAACAAGGTCTTCTTTCCCTGCTGATTCTGCC 5360415 Query 326 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 385 |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| Sbjct 5360414 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGGTAGGGACAATGGGAATCTCGT 5360355 Query 386 TAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 | |||||||||| ||||||||||||| ||||||||||||||||||| Sbjct 5360354 TCATCCATTCATATGCGTCACTAATTAAATGACGAGGCATTTGGCTA 5360308 >seq25 Length=19457651 Score = 183 bits (202), Expect = 1e-43 Identities = 133/156 (85%), Gaps = 11/156 (7%) Strand=Plus/Plus Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 |||| |||||||||||||||||||| ||||||||||||||||| ||| || Sbjct 10944133 GACTGGAGTCAAGCTCAACAGGGTCATCTTTCCCCGCTGATTCTGCC-----------CT 10944181 Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATG 398 ||||||||||||| |||||||||| |||||||||||||||||| ||| ||||||||||| Sbjct 10944182 TGGCTGTGGTTTCAGTAGATAGTAGGTAGGGACAGTGGGAATCTTGTTCATCCATTCATG 10944241 Query 399 CGCGTCACTAATTAGATGACGAGGCATTTGGCTACC 434 | ||||||||||||||||| | ||||||||||||| Sbjct 10944242 CCCGTCACTAATTAGATGATGGAGCATTTGGCTACC 10944277 >seq8 Length=30410158 Score = 143 bits (158), Expect = 9e-32 Identities = 91/99 (92%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 435 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTG 494 |||||| |||||||||||||||||||||||||| | |||| |||||||||||||||||| Sbjct 30400149 TTAAGACAGTCATAGTTACTCCCGCCGTTTACCTGTGCTTCATTGAATTTCTTCACTTTG 30400208 Query 495 ACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||| ||||| || Sbjct 30400209 ACATTCAGAGCACTGGGCAGAAATCACATCACGTCATCA 30400247 >seq19 Length=24127165 Score = 98.7 bits (108), Expect = 3e-18 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| |||||||| |||| ||||||| |||| || | ||||||||||||||| ||| | Sbjct 4771258 CTTCTGCTCTACGGGAGGTTTCTGTCCTCCCCAAGCTCGCCTTAGGACACCTGCATTACG 4771317 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 || |||| ||| ||||||||| ||||||||||||||| | |||| Sbjct 4771318 CATTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGCTACTGTC 4771364 >seq23 Length=19722170 Score = 91.5 bits (100), Expect = 5e-16 Identities = 82/102 (80%), Gaps = 1/102 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| |||||||| |||| || |||| |||| ||| | ||||||||||||||||||| | Sbjct 19033305 CTTCTGCTCTACGGGAGGTTCCTGTCCTCCCCGAGCTCGCCTTAGGACACCTGCGTTACG 19033364 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACA 108 ||| ||| ||| |||||| || ||||||||||| ||| || Sbjct 19033365 CTTT-GCAGGTGTACCGCCCAAGTCAAACTCCCCAACTGCCA 19033405 >seq10 Length=29046025 Score = 91.5 bits (100), Expect = 5e-16 Identities = 197/293 (67%), Gaps = 24/293 (8%) Strand=Plus/Plus Query 9 TTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGT 68 ||||||||| |||| ||||||| |||| ||| ||||||||||||||| ||| | | Sbjct 25590716 TTTGCTCTATGGGAGGTTTCTGTCCTCCCCGAGCTTGCCTTAGGACACCTGCATTACGCT 25590775 Query 69 TTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCGG 128 || |||| ||| | || |||| |||||| ||||||| || |||| |||||| Sbjct 25590776 TTGACAGGTGTACTGCACCAGTTAAACTCTCCACCTGTCACTGTC-----CCCGGA---- 25590826 Query 129 CCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGATT 188 || ||| | | || || || | | | | ||| ||| | |||| | Sbjct 25590827 ---GCTTGGGAGCCAGAAGCGAG-AACTAACCAGGGTTCACC-TCTCCACCTCATCAGGT 25590881 Query 189 AAGTaaaaaaaCGATAAGGGTAGTGGTATTTCAC---TTGCGCC-------GAAACGGCT 238 |||| | |||| | | |||||||| |||||| | ||||| | | | || Sbjct 25590882 AAGTGAGGAAACACTTAAAGTAGTGGTGTTTCACTGGTGGCGCCTGGTGGAGTGAGGCCT 25590941 Query 239 CCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAG 291 ||||||||||||||||| |||| ||| |||||| | | |||||||||| || Sbjct 25590942 CCCACTTATTCTACACCCCTCATGTCTCTTCACAGTGCCAGACTAGAGTCCAG 25590994 >seq28 Length=18419168 Score = 82.4 bits (90), Expect = 2e-13 Identities = 82/107 (77%), Gaps = 6/107 (6%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| |||||||| |||| || |||| || | |||||||||||| | |||| | Sbjct 6477534 CTTCTGCTCTACGGGAG------GTCCTCCCCAAGCTCGCCTTAGGACACCCGTGTTACG 6477481 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| |||| ||| ||||||||| ||||||||||||||| || |||| Sbjct 6477480 CTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGCCACTGTC 6477434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635047255968