Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq2 96.9 6e-18 seq15 91.5 2e-16 seq8 91.5 2e-16 seq29 86.0 1e-14 seq1 86.0 1e-14 seq3 82.4 1e-13 seq23 78.8 2e-12 seq13 78.8 2e-12 seq6 75.2 2e-11 seq11 73.4 6e-11 >seq2 Length=37257225 Score = 96.9 bits (106), Expect = 6e-18 Identities = 90/112 (80%), Gaps = 2/112 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| || | || |||| || || | Sbjct 28643779 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGCGTGTGCTTGGCTGAGGAGCCACT 28643836 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAAT 112 | |||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 28643837 GGTGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAAT 28643888 >seq15 Length=26085978 Score = 91.5 bits (100), Expect = 2e-16 Identities = 90/114 (79%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| || | || |||| || || | Sbjct 16626663 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGCGTGTGCTTGGCTGAGGAGCCACT 16626606 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| ||||||| ||||||||||| |||||||||||| Sbjct 16626605 GGTGCGAAGCTACCATCTGTGTGATTATGACTGAACGCCTCCAAGTCAGAATCC 16626552 >seq8 Length=30410158 Score = 91.5 bits (100), Expect = 2e-16 Identities = 90/114 (79%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||| | | |||||| | ||||| || | || |||| || || | Sbjct 30397778 GTACGAGAGGAACCACAGG-TTCAGAG-ATTTGGTGCATGTGCTTGGCTGAGGAGCCACT 30397721 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | || ||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 30397720 GGTGCAAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 30397667 >seq29 Length=15256605 Score = 86.0 bits (94), Expect = 1e-14 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| || | || ||| || || | Sbjct 10131063 GTACGAGAGGAACCGCAGG-TTCAGAC-ACTTGGTGCGTGTGCTTGGCTGTGGAGCCACT 10131120 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | | |||| ||||||||| |||||||| |||||||||||||||||||||||| Sbjct 10131121 GGTGAGAAGTTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 10131174 >seq1 Length=37510255 Score = 86.0 bits (94), Expect = 1e-14 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| || || |||| || || | Sbjct 33757229 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGCGTGTACTTGGCTGAGGAGCCACT 33757172 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | ||||| |||||||||| |||||||| |||||||||||||||| ||||||| Sbjct 33757171 GGTGCGAAACTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTAAGAATCC 33757118 >seq3 Length=35853109 Score = 82.4 bits (90), Expect = 1e-13 Identities = 87/112 (78%), Gaps = 2/112 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| || | || ||| || || | Sbjct 33208340 GTACGAGAGGAACCGCAGG-TTCAGAC-ACTTGGTGCGTGTGCTTGGGTGAGGAGCCACT 33208283 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAAT 112 | ||||||||| |||||| |||||||| ||||||||||||||| |||||| Sbjct 33208282 GGTGCGAAGCTAGCATCTGTGGGATTATGACTGAACGCCTCTAAGGCAGAAT 33208231 Score = 73.4 bits (80), Expect = 6e-11 Identities = 58/70 (83%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 45 TGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAA 104 || |||| || || || ||||||||||||||| |||||||| |||||| ||||||| Sbjct 21860387 TGGCTGAGGAGCCACTGGTGCGAAGCTACCATCTCTGGGATTATGACTGAACACCTCTAA 21860446 Query 105 GTCAGAATCC 114 |||||||||| Sbjct 21860447 GTCAGAATCC 21860456 >seq23 Length=19722170 Score = 78.8 bits (86), Expect = 2e-12 Identities = 86/112 (77%), Gaps = 2/112 (2%) Strand=Plus/Minus Query 3 ACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGC 62 |||||||||||| | | |||||| | ||||| || | || |||| || || || Sbjct 19032986 ACGAGAGGAACCACAGG-TTCAGAC-ATTTGGTGCGTGTGCTTGGCTGAGGAGTCACTGG 19032929 Query 63 CGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||| ||||||||| |||||||| ||||| |||||||||||||||||| Sbjct 19032928 TGTGAAGATACCATCTGTGGGATTATGACTGAATGCCTCTAAGTCAGAATCC 19032877 >seq13 Length=27425808 Score = 78.8 bits (86), Expect = 2e-12 Identities = 91/119 (76%), Gaps = 3/119 (3%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| |||||||||||| | |||||| | || || || | || |||| || || | Sbjct 21290960 GTAAGAGAGGAACCGCAGG-TTCAGAC-ATTTTGTGCATGTGCTTGGCTGAAGAGCCATT 21290903 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCC 119 |||||||||||||||| |||||||| |||||||||||| | ||||||||| |||| Sbjct 21290902 TGTGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTGAATCAGAATCC-TGCC 21290845 >seq6 Length=32139338 Score = 75.2 bits (82), Expect = 2e-11 Identities = 46/49 (94%), Gaps = 0/49 (0%) Strand=Plus/Minus Query 66 GAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 ||||||||||||||| |||||||| ||||| |||||||||||||||||| Sbjct 2983994 GAAGCTACCATCTGCGGGATTATGACTGAATGCCTCTAAGTCAGAATCC 2983946 >seq11 Length=28208075 Score = 73.4 bits (80), Expect = 6e-11 Identities = 90/119 (76%), Gaps = 3/119 (3%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| || | || |||| || || | Sbjct 5507491 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGCGTGTGCTTGGCTGAGGAGCCACT 5507548 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCC 119 | |||||||||||| | ||||||| ||||| | |||||||||||||||| |||| Sbjct 5507549 GGTACGAAGCTACCATTGGTGGGATTATAACTGAATGTCTCTAAGTCAGAATCC-TGCC 5507606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819125869824