Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq6278 176 1e-41 seq4 122 3e-25 >seq6278 Length=784 Score = 176 bits (194), Expect = 1e-41 Identities = 140/166 (84%), Gaps = 3/166 (2%) Strand=Plus/Plus Query 341 TTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA--GTAAGGTACTATCAAA 398 || ||||||||||||||| ||||| |||| |||||||| ||| || || | |||||| Sbjct 149 TTTGCATGTATTAGCTCTGGAATTGCCACAGTTATCCAAGTAACGTGTGGAGCGATCAAA 208 Query 399 TAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTA 458 ||| ||||||||||||||||||||||||||||||||||||| || | | ||||| Sbjct 209 GGAACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACAGTCCGTGTGCACTTA 268 Query 459 GACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||| ||||||||||||||||||||||||||||||| ||||||||| Sbjct 269 GACCTGCATGGCTTAATCTTTGAGACAAGCATATG-TTACTGGCAG 313 >seq4 Length=34595840 Score = 122 bits (134), Expect = 3e-25 Identities = 145/199 (73%), Gaps = 11/199 (6%) Strand=Plus/Minus Query 29 GAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGC 88 ||| ||||||| | ||| | | | |||||||||| ||| | || ||||||| Sbjct 5474007 GAGACCTGTATAATTATCTGTCATTACTACCTCCCTGTGCCAGGTATGGGTAA------- 5473955 Query 89 GCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACC 148 || ||||||||| ||| |||||||| ||||||| |||||||||| ||| || |||| Sbjct 5473954 ----GCAGCCTTCCTTTGATATGGTAGCCATTTCTCAAGCTCCCTCTCTGGATTCAAACC 5473899 Query 149 CTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGAT 208 || ||| | | ||| | | | || |||| ||||| |||| |||| | |||||||||| Sbjct 5473898 CTGATTACATGCTACTCATGGTCACAATGGAAGGCCCCTATAGTACCGTTGAAAGTTGAT 5473839 Query 209 AGGGCAGAAATTTGAATGA 227 || | || ||| |||||| Sbjct 5473838 AGAGTGGACATTCGAATGA 5473820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510258913536