Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq18 138 9e-28 seq25 105 5e-18 seq24 86.0 5e-12 >seq18 Length=24512808 Score = 138 bits (152), Expect = 9e-28 Identities = 117/144 (81%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| ||||| ||||| || |||||||| || ||||| ||||| |||| ||||| || Sbjct 14427942 GGTGTACTCCACAATCTCTGTGCACAGGTTGCTGCATTTGATGGTACCCAGGTTCTGCTG 14428001 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || |||||||||||||| || |||||||| | ||||||||||||||||||||| || Sbjct 14428002 GTTGCTCTTGCGATTGCAGGCGTCCTTGTATAACATGTACGGAGTGCCGGTCTCCGTCTG 14428061 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 |||||||||||||||| ||| || Sbjct 14428062 AGACTCAATGATGGCGTACCACAG 14428085 >seq25 Length=19457651 Score = 105 bits (116), Expect = 5e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| | ||||| || |||||| | ||||| || ||||| || || ||||| | Sbjct 18108212 TGGAGCGATTCACTCAGGAAGTCCAAGTGACCGAGGCACGCTGTTTTTATGGTTTCCAAA 18108271 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 ||||||||||||| | ||||| ||||||||||| | || || || |||||||||| || Sbjct 18108272 TTGCCATGGAGAACATTCACTCTGAGATGTACAGCCTACTTATTGACACGTACATCAAGG 18108331 Query 61376 A 61376 | Sbjct 18108332 A 18108332 >seq24 Length=19702765 Score = 86.0 bits (94), Expect = 5e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||||||||| || | ||||| || | ||| || ||||||||||| || |||||| Sbjct 12663662 CAGGAGGTGCAGGTTCCTGAGGCTCGCTCTTTTTATGGCTTCCAGATCCTGATTGAGAAT 12663603 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 || ||||| ||||||||||| | || || | || ||||||||||| Sbjct 12663602 GTGCACTCAGAGATGTACAGCCTGCTGATTAACACATACATCAGGGA 12663556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397522739492240