Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq135 149 3e-33 seq308 140 1e-30 seq1685 136 2e-29 seq175 78.8 4e-12 >seq135 Length=1196164 Score = 149 bits (164), Expect = 3e-33 Identities = 102/115 (89%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 1123978 GGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGA 1124037 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| | |||||| ||| ||||||||||| ||||| || ||||||||||||||| Sbjct 1124038 GGCCTGTAGCGGTCCTGACGTGCAAATCGGTCGTCCAACCTGGGTATAGGGGCGA 1124092 >seq308 Length=414302 Score = 140 bits (154), Expect = 1e-30 Identities = 100/115 (87%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 980 GGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGTGAAGCCAGAGGAAACTCTGGTGGT 1039 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| || |||||| ||| |||||||| | ||||| | ||||||||||||||| Sbjct 1040 GGCCCGTAGCGGTCCTGACGTGCAAACCAGTCGTCCGACCTGGGTATAGGGGCGA 1094 >seq1685 Length=14820 Score = 136 bits (150), Expect = 2e-29 Identities = 99/115 (86%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 6515 GGACCCAAAAGATGGTGAACTATGCCTGGGCAGGGTGAAGCCAGAGGAAACTCTGGTGGA 6456 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| || | ||||| || |||||||||| | ||| || |||||||||||| || Sbjct 6455 GGCCCGTATCGGTTTTGAGGTGCAAATCGGTTGTCCAACCTGGGTATAGGGGTGA 6401 >seq175 Length=927911 Score = 78.8 bits (86), Expect = 4e-12 Identities = 57/66 (86%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 618 ACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAG 677 |||||||||||||| || |||||| ||| ||||||||||| ||||| | ||||||||| Sbjct 766945 ACTCTGGTGGAGGCCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAG 767004 Query 678 GGGCGA 683 |||||| Sbjct 767005 GGGCGA 767010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079934084150