Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq213 338 1e-90 seq1685 318 1e-84 seq31 232 1e-58 seq202 214 3e-53 seq164 199 7e-49 seq512 190 3e-46 seq3047 156 7e-36 seq578 143 5e-32 seq132 138 2e-30 seq167 131 3e-28 seq20 131 3e-28 seq183 113 8e-23 seq47 111 3e-22 seq52 104 4e-20 seq165 86.0 1e-14 seq6 80.6 5e-13 seq342 73.4 7e-11 seq84 73.4 7e-11 >seq213 Length=676571 Score = 338 bits (374), Expect = 1e-90 Identities = 254/296 (86%), Gaps = 2/296 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| ||| || || ||||||||||||||||||||||||||||| Sbjct 237554 TACTGAGCAGGATTACTGTTGCAGCAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 237613 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGC-TTACC 118 | |||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 237614 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCNTTGGT 237673 Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| Sbjct 237674 GAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCT 237733 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238 ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 237734 ATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGC 237793 Query 239 CTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 | ||| | | | |||||||| ||||| | |||||| ||| |||||||| Sbjct 237794 TTAAAACCCAAAAAGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTCA 237849 >seq1685 Length=14820 Score = 318 bits (352), Expect = 1e-84 Identities = 237/276 (86%), Gaps = 1/276 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| ||| || || ||||||||||||||||||||||||||||| Sbjct 7713 TACTGAGCAGGATTACTGTTGCAGCAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 7772 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||| ||||||||||||||||||| | Sbjct 7773 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTTGGTGAACAATCCAACGCTTGGTG 7832 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 7833 AATTCTGTTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 7892 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 7893 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 7952 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACA 275 | ||| | | | | |||||||| ||||| || Sbjct 7953 TAAAACCCCAAAAGTCAGAAGGATCGTGAGGCCTCA 7988 >seq31 Length=4147117 Score = 232 bits (256), Expect = 1e-58 Identities = 154/171 (90%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| || Sbjct 3321934 ATCAGTAGGGTCAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTGTT 3321875 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 |||||||||||||||||| |||| |||||||||||| ||||||||||||||||| | Sbjct 3321874 AGTGGGTGAACAATCCAATGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGATA 3321815 Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCA 203 |||||||| ||||||| |||||||||||||||| |||| |||||||| || Sbjct 3321814 TCGAAGGAACAAAAAGTGACGTCGCTATGAACGCCTGGCCGCCACAAGTCA 3321764 >seq202 Length=751083 Score = 214 bits (236), Expect = 3e-53 Identities = 169/204 (83%), Gaps = 9/204 (4%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||| ||||||||||||||||||||| ||| ||||| ||||||||| |||||||| Sbjct 255207 TCATCAGTCGGGTAAAACTAACCTGTCTCACGACTGTCTATACCCAGCTCCTGTTCCCTA 255266 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 || ||| ||||||||| | | | ||| || ||| | ||||||||||| Sbjct 255267 TTGGTGTGTGAACAATACTTGG---------TGCTGTTTTACAATGGTGGGAAGAGCCGA 255317 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||| ||||||||||||| ||| ||||||||||||||||| |||||||||||||||||| Sbjct 255318 CATCTCAGGATCAAAAAGCGACGGCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCC 255377 Query 211 CTGTGGTAACTTTTCTGGCACCTC 234 ||||||||||||||||| |||||| Sbjct 255378 CTGTGGTAACTTTTCTGACACCTC 255401 >seq164 Length=995528 Score = 199 bits (220), Expect = 7e-49 Identities = 124/133 (93%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 333313 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCACACGTTCCCTA 333372 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 333373 TTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGA 333432 Query 151 CATCGAAGGATCA 163 ||||||||| ||| Sbjct 333433 CATCGAAGGGTCA 333445 >seq512 Length=181062 Score = 190 bits (210), Expect = 3e-46 Identities = 128/142 (90%), Gaps = 1/142 (1%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 102442 TCATTAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAATCCCAGCTCACATTCCCTA 102383 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||| ||| |||||||||||| |||||||||| ||| || Sbjct 102382 TTAGTGGGTGAACAATCCAACACTTGGTGAATTCTGCTTCACAATGATAGGAACAGCTGA 102323 Query 151 CATCGAAGGATCA-AAAAGCAA 171 |||| |||||||| |||||||| Sbjct 102322 CATCAAAGGATCAAAAAAGCAA 102301 >seq3047 Length=5109 Score = 156 bits (172), Expect = 7e-36 Identities = 114/131 (87%), Gaps = 1/131 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| ||| || || ||||| ||||||||||||||||||||||| Sbjct 3222 TACTGAGCAGGATTACTGTTGCAGCAACACATCATCCGTAGGGTAAAACTAACCTGTCTC 3163 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||| ||||||||||||||||||||||||||||||||| | Sbjct 3162 ACGACGGTCTAAACCCAGCTCATGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 3103 Query 120 AATTCTGCTTC 130 ||||||||||| Sbjct 3102 AATTCTGCTTC 3092 >seq578 Length=151846 Score = 143 bits (158), Expect = 5e-32 Identities = 94/104 (90%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 58 TCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTAC 117 ||| ||||| |||||||||| || |||||||||||||||||||||||||||||||||| Sbjct 548 TCACGACGGCCTAAACCCAGGTCCCGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGG 607 Query 118 CGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGAT 161 |||||||||||| |||||||||||||||||||||||||||| Sbjct 608 TGAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGAT 651 >seq132 Length=1212410 Score = 138 bits (152), Expect = 2e-30 Identities = 157/208 (75%), Gaps = 12/208 (6%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||| |||||||||||||||||| |||||| ||| ||| |||||||| || | || Sbjct 481951 TCATCAAGAGGGTAAAACTAACCTGTTTCATGATAATCTTAACACAGCTCACATTTCTTA 481892 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||| || ||||||||| ||| |||||||| ||| |||| | ||| || | Sbjct 481891 TTAATGAGTGAACAAT-----ACTTTGTGAATTCTGGTTCACAATGAGAAAAAGGGC--A 481839 Query 151 CA-TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTT----GGCTGCCACAAGCCAGT 205 || || ||| ||||||| | || |||||||| |||| ||| ||||||||||| Sbjct 481838 CAGTCAAAGAATCAAAACATGATGTTGCTATGAATGCTTAACCACCTGTCACAAGCCAGT 481779 Query 206 TATCCCTGTGGTAACTTTTCTGGCACCT 233 |||||||||||||||||||||| || || Sbjct 481778 TATCCCTGTGGTAACTTTTCTGACAGCT 481751 >seq167 Length=977937 Score = 131 bits (144), Expect = 3e-28 Identities = 86/95 (91%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 45 AAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACA 104 |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| Sbjct 447582 AAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGCTCCCTATTAGTGGGTGAACA 447641 Query 105 ATCCAACGCTTACCGAATTCTGCTTCGGTATGATA 139 |||||||||| |||||||||||| |||||| Sbjct 447642 GTCCAACGCTTGGTGAATTCTGCTTCACAATGATA 447676 >seq20 Length=4815359 Score = 131 bits (144), Expect = 3e-28 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 158 GGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGT 217 |||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||| Sbjct 3985642 GGATCAAAAAGCGACGTTGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGT 3985583 Query 218 AACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACT 277 |||||||||| |||||| || | ||| | | | |||||| | ||||| | || Sbjct 3985582 AACTTTTCTGACACCTCCTGCTTAAAACCCAAAAAGTCAGAAGGATGGTGAGGCCCCGCT 3985523 Query 278 TTCATGGTTTGTATTCA 294 |||| || |||||||| Sbjct 3985522 TTCACAGTCTGTATTCA 3985506 Score = 82.4 bits (90), Expect = 1e-13 Identities = 70/87 (80%), Gaps = 6/87 (7%) Strand=Plus/Plus Query 40 GGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGT 99 ||| |||||||| |||||||| || ||||||||||||| ||||||| ||||||| Sbjct 2558063 GGGAAAAACTAAACTGTCTCACGATAGTCTAAACCCAGC------TCCCTATAAGTGGGT 2558116 Query 100 GAACAATCCAACGCTTACCGAATTCTG 126 ||||||||||| |||| ||||||| Sbjct 2558117 GAACAATCCAAGGCTTGGTCAATTCTG 2558143 >seq183 Length=861846 Score = 113 bits (124), Expect = 8e-23 Identities = 81/94 (86%), Gaps = 6/94 (6%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||| |||||||||||| |||||||||||| |||||| Sbjct 600481 TCATCAGTAGGGTAAAACTAACATGTCTCATGACGTTCTAAACCCAGC------TCCCTA 600534 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTC 124 |||||||||||||||||||| | || |||||| Sbjct 600535 TTAGTGGGTGAACAATCCAATGTTTGGTGAATTC 600568 >seq47 Length=3274294 Score = 111 bits (122), Expect = 3e-22 Identities = 67/71 (94%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| || Sbjct 1189668 TCATCAGTAGGGTAAAACTAACCTGTCTCACAACGGTCTAAACCCAGCTCATGTTCCGTA 1189609 Query 91 TTAGTGGGTGA 101 ||||||||||| Sbjct 1189608 TTAGTGGGTGA 1189598 >seq52 Length=3058325 Score = 104 bits (114), Expect = 4e-20 Identities = 63/67 (94%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||| Sbjct 2499643 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACCGTCTAATCCCAGCTCACGTTCCCTA 2499702 Query 91 TTAGTGG 97 | ||||| Sbjct 2499703 TGAGTGG 2499709 >seq165 Length=987786 Score = 86.0 bits (94), Expect = 1e-14 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCC 87 |||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||| Sbjct 471579 TCATCAGTAGGGTAAAACTAACCTGTCTCACAACGGTCTAATCCCAGCTCATGTTCC 471635 >seq6 Length=8651236 Score = 80.6 bits (88), Expect = 5e-13 Identities = 72/91 (79%), Gaps = 7/91 (8%) Strand=Plus/Minus Query 43 TAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAA 102 ||||| |||||||||| |||||||||||||||||||||||| |||| |||| Sbjct 6445648 TAAAAGTAACCTGTCTGTCGACGGTCTAAACCCAGCTCACGTTTCCTA-------CTGAA 6445596 Query 103 CAATCCAACGCTTACCGAATTCTGCTTCGGT 133 ||||||||||||| ||||| ||| || || Sbjct 6445595 CAATCCAACGCTTGGGGAATTGTGCCTCCGT 6445565 >seq342 Length=359823 Score = 73.4 bits (80), Expect = 7e-11 Identities = 54/63 (86%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||| |||||| ||| || |||||||| ||||| ||||||||||||||||||||||| Sbjct 265380 CTGTTTCATGATTGTCCAATCCCAGCTCTCGTTCTTTATTAGTGGGTGAACAATCCAACA 265439 Query 113 CTT 115 ||| Sbjct 265440 CTT 265442 >seq84 Length=2188509 Score = 73.4 bits (80), Expect = 7e-11 Identities = 57/68 (84%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 139 AGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACA 198 |||||||| |||||| || |||||||||||||| || | |||||| | |||| ||||| Sbjct 2075682 AGGAAGAGATGACATCAAATGATCAAAAAGCAACATCTCAATGAACACATGGCCACCACA 2075623 Query 199 AGCCAGTT 206 |||||||| Sbjct 2075622 AGCCAGTT 2075615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854373744288