Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq308 356 8e-96 seq213 315 2e-83 seq100 161 3e-37 seq2211 156 1e-35 seq6 118 3e-24 seq1685 107 6e-21 seq895 104 8e-20 seq211 75.2 4e-11 seq209 75.2 4e-11 >seq308 Length=414302 Score = 356 bits (394), Expect = 8e-96 Identities = 276/341 (81%), Gaps = 48/341 (14%) Strand=Plus/Minus Query 241 CACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGG 300 |||||||||||||||||||| ||| || |||| | | |||||||||||||||||||||| Sbjct 2851 CACTTATTCTACACCTCTCATGTCTCTTTACAATGCCAGACTAGAGTCAAGCTCAACAGG 2792 Query 301 GTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAG 360 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 2791 GTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAG 2732 Query 361 TAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGA 420 || ||||||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 2731 GAGGTAGGGACAGTGGGAATCTCATTCATCCATTCATGCGCGTCACTAATTAGATGACGA 2672 Query 421 GGCATTTGGCTAC---------CTTA---------------------------------- 437 ||||||||||||| |||| Sbjct 2671 GGCATTTGGCTACTGAGGCGAGCTTATCCGCAACCCGCTTTACGGCTTGACCCGTGGCCG 2612 Query 438 -----AGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492 |||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 2611 TCACGTGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCACTT 2552 Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||| ||||||||||||||||||||| ||||||||| Sbjct 2551 TGACATTCAAAGCACTGGGCAGAAATCACATCGCGTCAACA 2511 >seq213 Length=676571 Score = 315 bits (348), Expect = 2e-83 Identities = 331/435 (76%), Gaps = 33/435 (8%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||||| ||| ||||||| |||| |||| | ||||||||||||||||||| Sbjct 237882 CTTCTGCTCTATGGGATGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACA 237941 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||| |||||||| |||| |||||||||||||||||| | || || ||| | Sbjct 237942 GTTTGACAGGTGTGCCGCACCAGTCAAACTCCCCACCTGACACTTTC-----CCTGGAGC 237996 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 || | || || || || | | || | | | ||||| | ||| Sbjct 237997 GGGTCACG-----CC----CGGCACACACCGGGTGATTGACACCAGAAC--------TGA 238039 Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGC-GCCGAAACGGCTCCCACTT 245 | |||||||||||| ||||||||||||||| || |||| | | ||||||||| Sbjct 238040 GAGCCCACAAAAACGATAAGAGTAGTGGTATTTCACCGGCAGCCGGAGC--CTCCCACTT 238097 Query 246 ATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 305 ||||||||||||||| ||| ||||| | |||| ||||||| ||| |||||||||| Sbjct 238098 ATTCTACACCTCTCATGTCTCTTCACGGTGCTAGACTTGAGTCAATCTCTACAGGGTCTT 238157 Query 306 CTTTCCCCGCT--------GATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 357 ||||||||||| ||||| ||||||||| | |||||||| ||||||||||||| Sbjct 238158 CTTTCCCCGCTTCCCTGCTGATTCTGCCAAGCCCATCCCCTTGGCCATGGTTTCGCTAGA 238217 Query 358 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGA 417 | || |||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 238218 TTTGAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATGA 238277 Query 418 CGAGGCATTTGGCTA 432 |||||||||||| || Sbjct 238278 CGAGGCATTTGGGTA 238292 >seq100 Length=1804494 Score = 161 bits (178), Expect = 3e-37 Identities = 113/129 (88%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 305 TCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGA 364 ||||||||||||||||| |||||||||||||||| ||||| |||||| | | || || Sbjct 903464 TCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTCGGCTGCAGTTTCGGCAAACAGGAGG 903523 Query 365 TAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCA 424 ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| Sbjct 903524 ACCGGACAGTGGGAATCTTGTTCGTCCATTCATGCGCGTCACTAATTAGATGACGAGGCA 903583 Query 425 TTTGGCTAC 433 ||||||||| Sbjct 903584 TTTGGCTAC 903592 >seq2211 Length=10280 Score = 156 bits (172), Expect = 1e-35 Identities = 95/101 (94%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 333 TTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCA 392 ||||| ||||||||||||||||||||| || ||||||||||||||||||| || ||||| Sbjct 5561 TTCCCCCGGCTGTGGTTTCGCTAGATAGGAGGTAGGGACAGTGGGAATCTCTTTCATCCA 5620 Query 393 TTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTAC 433 ||||||||||||||||||||||||||||||||||||||||| Sbjct 5621 TTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTAC 5661 >seq6 Length=8651236 Score = 118 bits (130), Expect = 3e-24 Identities = 103/126 (82%), Gaps = 3/126 (2%) Strand=Plus/Minus Query 324 CCAAGCCCGTTCC-CTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCT 382 |||||||| | || |||| || ||||| | ||||| | || ||||||||||||| |||| Sbjct 4786552 CCAAGCCCATCCCTCTTGACTTTGGTTCCACTAGAAAAGAGGTAGGGACAGTGGGGATCT 4786493 Query 383 CGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGA 442 |||| |||| ||||||| || || ||||||||||||||||||||| ||||||| | | Sbjct 4786492 CGTTCATCCTTTCATGCTTGTTACCAATTAGATGACGAGGCATTTGTCTACCTT--CATA 4786435 Query 443 GTCATA 448 |||||| Sbjct 4786434 GTCATA 4786429 >seq1685 Length=14820 Score = 107 bits (118), Expect = 6e-21 Identities = 85/102 (83%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || ||| |||||||| |||| ||||| |||||| |||||||||||| Sbjct 8032 CTTCTGCTCAACGGGACATTTCTGTCCTCCCTGAGTTTGCCTTAGAACACCTGCGTTACC 8091 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACA 108 |||| |||| ||| ||||||||| ||||||||||||||| || Sbjct 8092 GTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGCCA 8133 >seq895 Length=49078 Score = 104 bits (114), Expect = 8e-20 Identities = 84/102 (82%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| |||||||| |||| ||||||| |||| |||| | |||||||||||||||||||| Sbjct 5226 CTTCTGCTCTACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTATC 5285 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACA 108 |||| |||| || | ||| ||| |||||||||||| || || Sbjct 5286 GTTTGACAGGTGCACTGCCTCAGTCAAACTCCCCACATGCCA 5327 >seq211 Length=707569 Score = 75.2 bits (82), Expect = 4e-11 Identities = 52/59 (88%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 341 GCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGC 399 |||||| |||||||||| || || |||||||||||| |||||| || |||||||||||| Sbjct 525183 GCTGTGATTTCGCTAGACAGGAGGTAGGGACAGTGGAAATCTCTTTCATCCATTCATGC 525125 >seq209 Length=724856 Score = 75.2 bits (82), Expect = 4e-11 Identities = 71/91 (78%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 16 TACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAG 75 || || || ||||||| ||||||||| | |||||||| ||||| |||| || |||| Sbjct 666876 TAAAGAAGGTTTCTGTCCTCCATGAGCTCGCCTTAGGATACCTGTGTTACCCTTGGACAG 666935 Query 76 ATGTGCCGCCCCAGCCAAACTCCCCACCTGA 106 ||| | | |||| |||||||||||||||| Sbjct 666936 GTGTACTGTCCCAATCAAACTCCCCACCTGA 666966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635149750304