Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq1685 105 1e-20 seq213 105 1e-20 seq51 96.9 6e-18 seq3047 93.3 7e-17 seq87 80.6 4e-13 >seq1685 Length=14820 Score = 105 bits (116), Expect = 1e-20 Identities = 105/132 (80%), Gaps = 3/132 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 7715 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 7658 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | || |||||||||||||| |||||||| |||||||||||||||||||||||| |||| Sbjct 7657 GAGGCAAAGCTACCATCTGCGGGATTATGACTGAACGCCTCTAAGTCAGAATCC-TGCCT 7599 Query 121 GAACGGGGTGAT 132 | | |||||| Sbjct 7598 AGATGTGGTGAT 7587 >seq213 Length=676571 Score = 105 bits (116), Expect = 1e-20 Identities = 105/132 (80%), Gaps = 3/132 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| || | |||||| | ||||| | || | | |||| || || | Sbjct 237556 GTACGAGAGGAACTGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTAGCTGAGGAGCCAAT 237499 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | ||||||||||||||||| |||||||| |||||||||||||||||||||||| |||| Sbjct 237498 GGGGCGAAGCTACCATCTGCGGGATTATGACTGAACGCCTCTAAGTCAGAATCC-TGCCT 237440 Query 121 GAACGGGGTGAT 132 ||| |||||| Sbjct 237439 AGACGTGGTGAT 237428 >seq51 Length=3061461 Score = 96.9 bits (106), Expect = 6e-18 Identities = 95/119 (80%), Gaps = 3/119 (3%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||| |||| | |||||| | ||||| | || | || |||| || || | Sbjct 2173812 GTACGAGAGGAGCCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 2173755 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCC 119 | |||||||||||||||| |||||||| ||||||||||| |||||||||||| |||| Sbjct 2173754 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCCAAGTCAGAATCC-TGCC 2173697 >seq3047 Length=5109 Score = 93.3 bits (102), Expect = 7e-17 Identities = 102/132 (77%), Gaps = 3/132 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||| ||||||| | |||||| | ||| | | || | || ||| || || | Sbjct 3220 GTACGAGAAGAACCGCAGG-TTCAGAC-ATTTGATGTATGTGTTTGGCTGGGGAGCCAAT 3277 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||||| |||||||| || ||||||||||||||||||||| |||| Sbjct 3278 GGGACGAAGCTACCATCTGCGGGATTATGACTAAACGCCTCTAAGTCAGAATCC-TGCCT 3336 Query 121 GAACGGGGTGAT 132 ||| |||||| Sbjct 3337 AGACGTGGTGAT 3348 >seq87 Length=2120634 Score = 80.6 bits (88), Expect = 4e-13 Identities = 60/69 (87%), Gaps = 1/69 (1%) Strand=Plus/Plus Query 64 GCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAA 123 ||||||||||||||||| | |||||| ||||||||||| |||||||||||| |||| | Sbjct 1414607 GCGAAGCTACCATCTGCGGCATTATGACTGAACGCCTCAAAGTCAGAATCC-TGCCTAGA 1414665 Query 124 CGGGGTGAT 132 || |||||| Sbjct 1414666 CGTGGTGAT 1414674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819175612672