Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq532 226 9e-57 seq291 212 2e-52 seq80 113 1e-22 seq1087 75.2 3e-11 >seq532 Length=172860 Score = 226 bits (250), Expect = 9e-57 Identities = 293/396 (74%), Gaps = 18/396 (5%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||| |||||||| | || | |||||| ||||||| ||||| | |||| || Sbjct 77123 GTACTCATTTCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCATCACCACT 77064 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||| | ||| ||| || |||||||| |||||||||| |||||| ||||||||||| || Sbjct 77063 TCCC-GAGTCAGGAGTGCTTAATTTGCACGCCTGCTGCTTTCCTTAGATGTGGTAGCTGT 77005 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||| ||||| |||||||||||| |||||||||||||||| | ||||||| Sbjct 77004 TTCTCAGGCTCTCTCTCTAGAATCGAACCCTGATTCCCCGTTACCCGTGGTCACCATGGC 76945 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| || | |||| ||| |||||||||||||| | || ||||| | |||| Sbjct 76944 AGGCACATAGCGCGCCATTGAATGTTGATAGGGCAGACACTTCAATGAGACGCCGCCACT 76885 Query 240 TCA-AGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGG---- 292 || ||| | ||||| || | ||||| || |||||| |||| | | || Sbjct 76884 ACAGAGGGCCAGCGATCATCTCAAGGTTATCTAGAGTCACCA--GAGCAGCCAGGGTACC 76827 Query 293 --GCGTTGGTTTTTTATCTAATAAATACACCCCTTCC---GAAGTC-GGGGTTTTTAGCA 346 || | |||||| |||| |||||| || ||||| || ||| | | | || ||| Sbjct 76826 CTGCATGGGTTTTGGATCTGATAAATCCA-TGCTTCCTTGGAGGTCAGCGCTCGTTTGCA 76768 Query 347 TGTATTAGCTCTAGAATTACCACGGTTATCCATGTA 382 ||||||||||||| |||| |||| ||| | || ||| Sbjct 76767 TGTATTAGCTCTAAAATTGCCACAGTTGTGCAAGTA 76732 >seq291 Length=453751 Score = 212 bits (234), Expect = 2e-52 Identities = 342/478 (72%), Gaps = 33/478 (7%) Strand=Plus/Plus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| || | |||||||| | ||| ||| | ||||||||| | || ||||||||||| Sbjct 93632 TATTTTTTATTACTACCTCTTTGAGTCAGGAGTTGGTAATTTGTG-GCATGCTGCCTTCC 93690 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 || ||| |||||| ||| ||||| ||| || | ||||| ||||||||||||| |||| Sbjct 93691 TTAGATACGGTAGCAATTTTTCAGGTTCCTTCCTCAGAATCAAACCCTAATTCCCTGTTA 93750 Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 || || | ||||||||| ||| || | ||||| |||||||||||| || | Sbjct 93751 CCTGTGGTCACCATGGTA--CCA-TAGTGTGCCATCAAAAGTTGATAGGACAAGCCCATC 93807 Query 223 AATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGA 282 | | |||| |||| ||||||| ||| | ||||| | ||||||| || Sbjct 93808 ATTTC-CCATGATGGGCTT---GCCATGC--TTC---AGGTTATCTAAAGTCACCAAAGA 93858 Query 283 GCCC--CGAAGGG--------CGTTGGTTTTTTATCTAATAAATACACCCCTTCC--GAA 330 | || | | ||| | | |||||| |||| | |||||||| | |||| || Sbjct 93859 GGCCTCCCATGGGTCACCCCACATGGGTTTTGGATCTGACAAATACACGCATTCCCGGAG 93918 Query 331 GTCGGGGTTT-TTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGT 389 ||| | | || || ||||||||||||||||| |||| |||||| | ||| | ||| Sbjct 93919 GTCAGCACTCATTTGCCCGTATTAGCTCTAGAATTGCCACAGTTATCTAAGTAAT--GGT 93976 Query 390 A---CTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGAT 446 | |||||||| ||| |||||||||||||||| |||| ||||||| ||| ||| || Sbjct 93977 AGAGCTATCAAAAGAACCATAACTGATTTAATGACCCATCTGCAGTTTTACTATAT-GAC 94035 Query 447 TGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 | | || ||||||||||| ||||||||||||||||| |||||| ||| |||| Sbjct 94036 CATGTGTGCTGAGACATGCATGACTTAATCTTTGAGACAAAAATATGA-TACAAGCAG 94092 >seq80 Length=2229659 Score = 113 bits (124), Expect = 1e-22 Identities = 131/171 (77%), Gaps = 8/171 (5%) Strand=Plus/Minus Query 337 GTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA---GTAAGGTACTA 393 || ||| || |||||||||| || |||| |||| || |||| ||| |||| || | Sbjct 933244 GTCTTTTGCGTGTATTAGCTGTAAAATTGCCACAGTCTTCCAAGTAAGAGTAAAGTG--A 933187 Query 394 TCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTAT 453 ||||| | | ||||| |||||||||||||||| |||| || | || | || | | Sbjct 933186 TCAAAGGACC-ATAACGGATTTAATGAGCCATTTGCAGCTTTCC-GTGCCAACTGTGTGT 933129 Query 454 ACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||| |||||||||||||| |||||||||||||||| |||||||||| Sbjct 933128 GCTTAGATTTGCATGGCTTAATCGTTGAGACAAGCATATG-CTACTGGCAG 933079 >seq1087 Length=24386 Score = 75.2 bits (82), Expect = 3e-11 Identities = 83/111 (75%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 4 CTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCC 63 |||||||| ||||| | | |||||| || ||| || || || ||||| |||||| Sbjct 9213 CTCATTCCGTTTACAGAAGCTGAAAGAGTCCCGTACGGTTAGTTTTTATCACTTCCTCCC 9154 Query 64 CGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTA 114 | || ||| |||||||||| | ||||||||||| |||||||||||| Sbjct 9153 CAAGTTAGGAGGAGGTAATTTGCACATCTGCTGCCTTCTTTGGATGTGGTA 9103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510353585408