Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq80 219 3e-52 seq478 118 8e-22 seq332 98.7 8e-16 >seq80 Length=2229659 Score = 219 bits (242), Expect = 3e-52 Identities = 756/1164 (65%), Gaps = 45/1164 (4%) Strand=Plus/Plus Query 65423 TTGATGACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGT 65482 |||| || |||||||| ||||| || || | ||| ||||||||| ||| || Sbjct 1867768 TTGACGATCTGGAACTCCCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCC 1867827 Query 65483 TCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACC 65542 || | ||| || ||||||| || || |||||||| || || || ||||| || || | | Sbjct 1867828 TCGATGGACTCGTTGTTGCCCAGGATCTGGGCAGTGGACGCCGTGGGCATCGGCGCCAGC 1867887 Query 65543 AACAATGAGTTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCAC 65602 | || ||| | || |||| | | || || | || | ||||| |||| Sbjct 1867888 AGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCAC 1867947 Query 65603 ATCGGTTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCC 65662 | ||| ||| | | | | | ||||| || | |||||| || | ||| | Sbjct 1867948 A--GGTCCGTCGGTGTCTTGCTC----CACATGTCGTACTGCAGGACGCCCCTGCTGACG 1868001 Query 65663 GGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCG 65722 || || || | | | ||||| || ||| ||| || | ||||| | ||| Sbjct 1868002 GGGGAGCCTTCGTACGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCCTCC 1868061 Query 65723 AGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTC 65782 || ||||| | || |||||||| || || | || || | ||||| ||| Sbjct 1868062 AGGGCGGCGTAGTAGATGGTCTCAAACATCTGGATGTTGAGCAGCTGCGCCTCGGGGCTT 1868121 Query 65783 TCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATG 65842 ||| |||| || ||||| || || | ||| |||| ||||| ||||| || || || Sbjct 1868122 TCGAACGGGTAACGCATCAAGATGAAGGCGTCTGCCAAGCCTTGGACTCCGATTCCAATT 1868181 Query 65843 GGACGATGACGCAAATTGGAACGTCTCGCCT-CAGGTACAGGGTAGTAATTGATATCGAT 65901 || | || ||| ||||| | ||||| || | || || |||||||| ||||| || || Sbjct 1868182 GGCCTGTGGCGCTTGTTGGACC-TCTCGGCTTCGGGGACCGGGTAGTAGTTGATTTCAAT 1868240 Query 65902 AATGCGATTCAAATTGCGTGTCACCACA----TG--CAC-GATACGTCGCAATTGTTCGA 65954 || |||| || | |||| | || ||| ||| | || || || || Sbjct 1868241 GATCTTGTTCAGGTT---TTTCACGATTACTTTGGTCACAGATGC----CAGTTTTTTGA 1868293 Query 65955 AATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAG 66014 | ||| || | || || || ||| || ||| ||| || || | | Sbjct 1868294 AGTCATAA------GTCCGCTCTGGCGTGACGTACATG------TTGAGA---GCGATGG 1868338 Query 66015 ATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACA 66074 | || || || || || || | |||||| | ||| ||||| || | || ||||||| Sbjct 1868339 AGGCCAGATTACAAACCGCCACCTCGTCTTGGCTGGTGTACTCCACGACCTCCGTGCACA 1868398 Query 66075 GATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCT 66134 | || ||||| |||||||||| ||||| ||||| ||||| | ||||| || || | Sbjct 1868399 GGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGATTGCTCTTCCTGTTGCACGCGTCTT 1868458 Query 66135 TGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAG 66194 |||| | ||||||||| || ||||| || || ||||| |||||||||| |||||| Sbjct 1868459 TGTAGAGCATGTACGGCGTTCCGGTTTCCGTCTGCGACTCGATGATGGCGTACCAAAGCT 1868518 Query 66195 CGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTC-GTAGAGGTGT 66253 | ||||||||| || | |||| || | ||||| ||| ||| || | Sbjct 1868519 GCTGAGCCTTCACCACCCGCTTCACCCTCCCCTCCTTCTCGTA-TGTCGTGTAAAGCTTC 1868577 Query 66254 TCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGAC 66313 || || || ||||| ||| || | ||||||| || ||||||||||| ||| Sbjct 1868578 TCAAACTCCTCCCCCCAGCACTCGTCGAGCCCGGGACACTCGTCGGGACACATCAGAGAC 1868637 Query 66314 CAATCACCATCCTGTTCTACAC--GACGCATAAATAGATCAGGTATCCAGAGGGCGTAGA 66371 || || | || ||| ||| | ||| || || || || ||||| |||||||||| Sbjct 1868638 CAGTCTTGGT--TGCTCTCCACTCGCTTCATGAACAGGTCGGGGATCCACAGGGCGTAGA 1868695 Query 66372 AGAGATCGCGTGCTCGTTGCTCCTC-AATGCCGTGATTTTTGCGCAAGTCGAGGAACTCA 66430 |||| || | |||| |||||||| | ||||| || || || || ||||| ||| Sbjct 1868696 AGAGGTCCCTGGCTCTCTGCTCCTCTTTTCCCGTG-TTCTTCTTCAGCTCCAGGAATTCA 1868754 Query 66431 AAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCA 66490 || | |||| ||||| || |||||||| || ||||| | || | |||| ||| Sbjct 1868755 AACACGTCGAAGTGCCACGGCTCCAGGTACATCGCGAAGGCTCCGGGCCTTTTGTTGCCG 1868814 Query 66491 CCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTA 66550 || ||||| ||||||||||| |||||| | || | || ||| || || | |||||| Sbjct 1868815 CCCTGGTCAACGTAGCGAGCAGTGTTGTTGTAAACTCTCAGCATGGGGACCAACCCGTTC 1868874 Query 66551 GATTTGCCATTGGTGCCGTCGATG 66574 || || || ||||||||| ||||| Sbjct 1868875 GAGTTCCCGTTGGTGCCGGCGATG 1868898 >seq478 Length=201109 Score = 118 bits (130), Expect = 8e-22 Identities = 100/123 (81%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 ||||||| ||| ||||||| || || ||| ||||||| | || ||||| || ||||||| Sbjct 175678 TGGAACGCTTCACGCAGGAAGTTCAGGTGCCGGAGGCCAGGTGCTTCTATGGTTTCCAGA 175737 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | ||||||||||| || ||||| ||||||||||| | || ||||| || ||||||| || Sbjct 175738 TCGCCATGGAGAACGTTCACTCTGAGATGTACAGCCTGCTGATCGACACCTACATCAAGG 175797 Query 61376 AGC 61378 ||| Sbjct 175798 AGC 175800 Score = 109 bits (120), Expect = 4e-19 Identities = 98/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 ||||||| ||| ||||||| || || || | || || | |||||||| || ||||||| Sbjct 188966 TGGAACGCTTCACGCAGGAAGTTCAGGTAACAGAAGCCAGGTGTTTCTATGGTTTCCAGA 188907 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | ||||||||||| ||||||| ||||||||||| | || ||||| || ||||||| || Sbjct 188906 TCGCCATGGAGAACATCCACTCTGAGATGTACAGCCTGCTGATCGACACCTACATCAAGG 188847 Query 61376 AGC 61378 ||| Sbjct 188846 AGC 188844 Score = 82.4 bits (90), Expect = 6e-11 Identities = 96/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 61493 TGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTT 61552 || |||| || || | || ||||| | || ||| ||| ||||| || || ||||| | Sbjct 176053 TGGTGGCCTTCGCTGCTGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCTGCCATCTTCT 176112 Query 61553 GGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGAT-ATCACGC 61611 || ||||||| | || || ||||||||||||||||||||||| ||| | || | || | Sbjct 176113 GGCTGAAGAAGAGAGGCCTGATGCCCGGTCTGACCTTCAGCAACGAGCTCATCAGCA-GA 176171 Query 61612 GACGAGG 61618 ||||||| Sbjct 176172 GACGAGG 176178 Score = 82.4 bits (90), Expect = 6e-11 Identities = 96/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 61493 TGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTT 61552 || |||| || || | || ||||| | || ||| ||| ||||| ||| | ||||| | Sbjct 188493 TGGTGGCCTTCGCTGCTGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCCTCCATCTTCT 188434 Query 61553 GGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGAT-ATCACGC 61611 || ||||||| | || || ||||||||||||||||||||||| ||| | || | || | Sbjct 188433 GGCTGAAGAAGAGAGGCCTGATGCCCGGTCTGACCTTCAGCAACGAGCTCATCAGCA-GA 188375 Query 61612 GACGAGG 61618 ||||||| Sbjct 188374 GACGAGG 188368 >seq332 Length=374033 Score = 98.7 bits (108), Expect = 8e-16 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 66050 GTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGA 66109 || ||||| |||| ||| ||||||||||| ||| | |||||||||| || || || Sbjct 70921 GTGTACTCTACAACTTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGGTTTTGCTGG 70980 Query 66110 TTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGG 66169 || ||||| | ||||| || |||||||| | |||||| || || || || || || Sbjct 70981 TTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTCCCCGTTTCTGTCTGC 71040 Query 66170 GACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACC 66208 ||||| |||||||||| ||| || | ||||||||| Sbjct 71041 GACTCGATGATGGCGTACCACAGCTGCTGAGCCTTCACC 71079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397553110208720