Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq1120 401 9e-110 seq880 132 7e-29 seq615 93.3 6e-17 >seq1120 Length=422497 Score = 401 bits (444), Expect = 9e-110 Identities = 245/256 (96%), Gaps = 3/256 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 419734 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 419791 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 419792 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 419851 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||| Sbjct 419852 CCCGGGCCTGTCGGCCAAGGCTATAAACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 419911 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 419912 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGCGGCCTAAAAG 419971 Query 241 GCCAT-CTCCCTCGAA 255 ||| | |||||| || Sbjct 419972 GCCGTAGTCCCTCTAA 419987 Score = 176 bits (194), Expect = 7e-42 Identities = 180/227 (79%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||||||||| ||||| |||||||||| |||||| | Sbjct 395973 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCGCTTACTGGGAATT-C 396030 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||| ||||||| |||| | || Sbjct 396031 CTCGTTCATGGGAAATAATTGCAATCCCCAATCCCTATCACGAGTGGGGTTCAGCGGGTT 396090 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACA-TCAGTGTAGCGCGCGTGC 178 |||| ||| ||||| |||| | | || || ||| | || ||||||| |||||||||| Sbjct 396091 ACCCACGCCTCTCGGCGAAGGGTAGACACACGCTGA-TCCACTCAGTGTGGCGCGCGTGC 396149 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 |||| | |||||||||||||||||||||||||||||| ||||| || Sbjct 396150 AGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 396195 >seq880 Length=965080 Score = 132 bits (146), Expect = 7e-29 Identities = 169/224 (75%), Gaps = 8/224 (4%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||||||||| ||||| | |||||||| |||| ||| Sbjct 630995 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCACGCTTACT-GGAAATTC 630938 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 || ||| | | || ||||||||| | ||||| ||||||| |||| | || Sbjct 630937 CTTGTTCATGGGAAATAATTGCAATCCCCAATCCCTATCACGAGTGGGGTTCAGCGGGTT 630878 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACA-TCAGTGTAGCGCGCGTGC 178 |||| ||| | || |||| | | || | ||| | || ||||||| || || ||| Sbjct 630877 ACCCACGCCTCTTGGTGAAGGGTAGACACACACTGA-TCCACTCAGTGTGGCACG--TGC 630821 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 |||| | ||||||||||||||||||||||||||| || ||||| Sbjct 630820 AGCCCCGGACATCTAAGGGCATCACAGACCTGTTACTG-CTCAA 630778 >seq615 Length=793902 Score = 93.3 bits (102), Expect = 6e-17 Identities = 174/249 (70%), Gaps = 30/249 (12%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGT-AG-------TCAACGCGAGCTTGATGACTCGCGCTTACTA 52 ||||||||||||||||| | || |||||| |||||| ||||| |||||||||| Sbjct 115703 GTACAAAGGGCAGGGACTTGAGCTTGAGCTCAACGTGAGCTT-ATGACCCGCGCTTACTG 115645 Query 53 GGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA-TGAAATTT 111 ||||||| | |||| | || || ||||||||| | ||||| ||||| | || || Sbjct 115644 GGAATTT-CACGTTCATGAGAAATAATTGCAATCCCCAATCCCTATCACAAGTGGGGTTC 115586 Query 112 CAAAGATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACA-TCAGTGTAGC 170 | || ||| ||| ||||| |||| | | || || || || || ||||||| || Sbjct 115585 AGCGGGTTGCCCACGCCTCTCGGCGAAGGGTAGACACACGCTG-ATCCACTCAGTGTGGC 115527 Query 171 GCGCGTGCGGCCCAGAACATCTAAG--------------GGCATCACAGACCTGTTATTG 216 |||||| |||| | ||||| || ||||||||||||||||||||| Sbjct 115526 GCGCGT--AGCCCCGGACATCACAGACCTGGGCATCACAGGCATCACAGACCTGTTATTG 115469 Query 217 CCTCAAACT 225 ||||| || Sbjct 115468 -CTCAATCT 115461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751956188010