Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq1120 131 9e-29 seq669 95.1 7e-18 seq1877 91.5 8e-17 seq1850 82.4 4e-14 seq1219 82.4 4e-14 seq1133 78.8 5e-13 seq462 77.0 2e-12 >seq1120 Length=422497 Score = 131 bits (144), Expect = 9e-29 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||||| ||||| || |||||| || Sbjct 420264 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGCC 420323 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 420324 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 420380 Score = 104 bits (114), Expect = 1e-20 Identities = 93/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || | | |||| ||| |||| ||||| |||| Sbjct 396503 GAACCCAAAGACTTTGGTTTCCCGGACGCTGCCCGGCGGGTCATGGGAATAACGCCGCCG 396562 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| ||||| ||||| ||||| ||| ||||||||||||||||||||||||||| Sbjct 396563 GATCGCTAGTTGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 396619 >seq669 Length=1139874 Score = 95.1 bits (104), Expect = 7e-18 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || | | |||| ||| |||| ||||| |||| Sbjct 560822 GAACCCAAAGACTTTGGTTTCCCGGACGCTGCCCGGCGGGTCATGGGAATAACGCCGCCG 560763 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTC 115 |||| ||||| ||||| ||| | ||| ||||||||||||||||||||||||| Sbjct 560762 GATCGCTAGTTGGCATCGTTCATGGTCGGAACTACGACGGTATCTGATCGTCTTC 560708 >seq1877 Length=3067337 Score = 91.5 bits (100), Expect = 8e-17 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| | || || | | |||| ||| |||| ||||| |||| Sbjct 450046 GAACCCAAAGACTTTGGTATCCCGGATGCTGCCCGGCGGGTCATGGGAATAACGCCGCCG 450105 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTC 115 |||| ||||| | ||| ||||| ||| ||||||||||||||||||||||||| Sbjct 450106 GATCGCTAGTTGTCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTC 450160 >seq1850 Length=509225 Score = 82.4 bits (90), Expect = 4e-14 Identities = 88/115 (77%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || | | |||| || |||| ||||| |||| Sbjct 396428 GAACCCAAAGACTTTGGTTTCCCGGACGCTGCCTGGCAGGTCATGGGAATAACGCCGCCG 396369 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTC 115 |||| || || ||||| ||||| ||| || ||||| |||| ||||||||| |||| Sbjct 396368 GATCACTCGTTGGCATCGTTTATGGTCAA-ACTACCACGGAATCTGATCGCCTTC 396315 >seq1219 Length=2077268 Score = 82.4 bits (90), Expect = 4e-14 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| | | | |||| ||| ||| ||||| ||| Sbjct 604623 GAACCCAAAGACTTTGGTTTCCTGGATGCTGCCTGGCGGATCATGGGAATAACGCTGCCG 604564 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTC 115 |||| ||||| ||||| ||||| ||| ||||| ||||||||||||||||||| Sbjct 604563 GATCGCTAGTTGGCATCGTTTATGGTCGGAACTACAACGGTATCTGATCGTCTTC 604509 >seq1133 Length=2349235 Score = 78.8 bits (86), Expect = 5e-13 Identities = 87/115 (76%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || | |||| ||| |||| | |||| | || Sbjct 1650741 GAACCCAAAGACTTTG-TTTCCCGGTCGCTGCCCGGCGGGTCATGGGAAAAACACCACCG 1650799 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTC 115 |||| ||||| ||||| ||||| ||| ||||||| |||||||||| |||||| Sbjct 1650800 GATCGCTAGTTGGCATCGTTTATGGTCGGAACTACGATGGTATCTGATGGTCTTC 1650854 >seq462 Length=596058 Score = 77.0 bits (84), Expect = 2e-12 Identities = 86/115 (75%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||| |||||||||||| |||| || | | |||| ||| |||| ||||| |||| Sbjct 318334 GAATCCAAAGACTTTGGTTTCCCGGATGCTGCCTGGCGGGTCATGGGAATAACGCCGCCG 318275 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTC 115 |||| ||||| ||||| |||| ||| | || ||| |||||||||||||||| Sbjct 318274 GATCGCTAGTTGGCATCATTTATGGTCGGAAATATGACAGTATCTGATCGTCTTC 318220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278384303460