Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq1120 233 4e-59 seq880 118 2e-24 seq1137 116 7e-24 seq669 111 3e-22 seq462 107 4e-21 seq1850 105 1e-20 seq1877 96.9 6e-18 seq615 93.3 8e-17 seq774 86.0 1e-14 seq1219 80.6 5e-13 >seq1120 Length=422497 Score = 233 bits (258), Expect = 4e-59 Identities = 203/248 (82%), Gaps = 3/248 (1%) Strand=Plus/Minus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| |||| |||| | |||||||||||| Sbjct 420627 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 420568 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | |||||| | |||| ||||| ||||| | ||| || |||||||| Sbjct 420567 GGGATAACATTATAGGATTT-CGGTCCTATTACGTTGGCCTTCGGGATCGGAGTAATGAT 420509 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| ||||| ||||||||| | ||||| || |||||||||||||||||||||||||| Sbjct 420508 TAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 420449 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||| ||| ||||||||||| || |||||||||||||||||||||| |||||||| Sbjct 420448 GAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAA 420390 Query 311 GTTAGGGG 318 ||| |||| Sbjct 420389 GTTGGGGG 420382 Score = 168 bits (186), Expect = 1e-39 Identities = 210/281 (75%), Gaps = 9/281 (3%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || | | | | | |||||||||||||||||||||||| Sbjct 396905 ATGCTCTTAGCTGAGTGTCCCGCGGGGTCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 396846 Query 98 TCAAAGCAGGCCT--TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGT 155 |||||||||||| | || |||||| ||| |||||||| ||||||||| | |||| Sbjct 396845 TCAAAGCAGGCCCGGTCGCCTGAATACCGCAGCTAGGAATAATGGAATAGGAC-TCCGGT 396787 Query 156 TCTATTTTGTTGGTTT---CTAGGACC-GCCGTAATGATTAATAGGGATAGTCGGGGGTG 211 |||||||||| ||||| || || | | | |||||||| ||||| | |||||| Sbjct 396786 TCTATTTTGTGGGTTTTCTCTCTGAACTGGGGCCATGATTAAGAGGGACGGCCGGGGGCA 396727 Query 212 TCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAA 271 | ||||| | |||||||||||||||||| ||||| || | |||||| Sbjct 396726 TTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACGAAAGCGAAA 396667 Query 272 GCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || || ||||| |||||||||||||||| |||||||||| Sbjct 396666 GCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 396627 >seq880 Length=965080 Score = 118 bits (130), Expect = 2e-24 Identities = 171/236 (72%), Gaps = 8/236 (3%) Strand=Plus/Plus Query 83 AAAAAATTAGAGTGTTCAAAGCAGGCCT--TTGCTCGAATACATTAGCATGGAATAATAG 140 ||||||| ||||||||| |||||||| | || |||||| ||| | |||||| | Sbjct 630325 AAAAAATGTGAGTGTTCACAGCAGGCCCGGTCGCCTGAATACCGCAGCTAGAAATAATGG 630384 Query 141 AATAGGACGTGCGGTTCTATTTTGTTGGTTT---CTAGGACC-GCCGTAATGATTAATAG 196 |||||||| | |||||||||||||| ||||| || || | | | |||||||| || Sbjct 630385 AATAGGAC-TCCGGTTCTATTTTGTGGGTTTTCTCTCTGAACTGGGGCCATGATTAAGAG 630443 Query 197 GGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGA 256 ||| || | |||| | ||||| | |||||||||||||||||| |||| Sbjct 630444 GGACAGCCAGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGACCGCCGCAAGA 630503 Query 257 CTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 | | | ||||||| || ||||| |||||||||||||||| |||||||||| Sbjct 630504 CGGATGAAAGCGAAAGAATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 630558 >seq1137 Length=1270077 Score = 116 bits (128), Expect = 7e-24 Identities = 172/238 (72%), Gaps = 8/238 (3%) Strand=Plus/Minus Query 79 TTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT--TTGCTCGAATACATTAGCATGGAATA 136 |||||||| ||||||||||||||||||||| | | || | |||| ||| |||||| Sbjct 1110788 TTTGAAAACATTAGAGTGTTCAAAGCAGGCTTGGTCGCCTGGATACTGCAGCTAGGAATA 1110729 Query 137 ATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTT---CTAGGACC-GCCGTAATGATTA 192 || ||||||||| | |||||| |||||| ||||| || || | | | ||||||| Sbjct 1110728 ATGGAATAGGAC-TCTGGTTCTGTTTTGTGGGTTTTCTCTCTGAGCTGGGGCTATGATTA 1110670 Query 193 ATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTG 252 | ||||| | | | || | |||| || |||||||||||||||||| || Sbjct 1110669 AGAGGGACGGCCAGAGGCATTCATATTACGCTGCTAGAGGTGAAATTCTTGGACCGGCTG 1110610 Query 253 AAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||| | | || ||||| || ||||| |||||||||||||||| |||| ||| Sbjct 1110609 AAGACGGATGAAAGCAAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACAAAA 1110553 >seq669 Length=1139874 Score = 111 bits (122), Expect = 3e-22 Identities = 167/232 (72%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 86 AAATTAGAGTGTTCAAAGCAGGCCT--TTGCTCGAATACATTAGCATGGAATAATAGAAT 143 ||||||||||||||||||||||||| | || |||||| ||| |||||||| |||| Sbjct 560482 AAATTAGAGTGTTCAAAGCAGGCCTGCTCGCCTGAATACCGCAGCTAGGAATAATGGAAT 560541 Query 144 AGGACGTGCGGTTCTATTTTGTTGG-TTTCT---AGGACCGCCGTAATGATTAATAGGGA 199 ||||| | |||||||||||||| || ||||| | || | | | |||||| ||||| Sbjct 560542 AGGAC-TCCGGTTCTATTTTGTGGGTTTTCTCTCTGAACTGGGGCCACGATTAAGAGGGA 560600 Query 200 TAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTA 259 | |||||| | |||| | |||||||||||| ||||| ||||| Sbjct 560601 CGGCCGGGGGCATTTATATTGTGCCGCTAGAGGTGAAATTTTTGGACCGGCGCAAGACAG 560660 Query 260 ACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAG 311 || | | |||||| || | ||| ||||||||||| |||| ||||| ||| Sbjct 560661 ACGAAAGTGAAAGCATTTGCTAAGAATGTTTTCATTGATCA-AGAACGGAAG 560711 >seq462 Length=596058 Score = 107 bits (118), Expect = 4e-21 Identities = 200/285 (70%), Gaps = 14/285 (5%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGA---G 94 |||| |||| ||| |||| | | | | | | | | ||||||||||||||| || | | Sbjct 317941 ATGCTCTTCGCTGAGTGTCCGGCAGGGTCTGAAGCGTTTACTTTGAAAAAAATAAAAAGG 318000 Query 95 TGTTCAAAGCAGGCCT--TTGCTCGAA--TACATTAGCATGGAATAATAGAATAGGACGT 150 |||||||||||||| | || || ||| ||| |||||||| |||| |||| | Sbjct 318001 GGTTCAAAGCAGGCCAGGTAGCATGAGAGTACCACAGCTAGGAATAATGGAATTGGAC-T 318059 Query 151 GCGGTTCTATTTTGTTGGTTT---CTAGGACC-GCCGTAATGATTAATAGGGATAGTCGG 206 |||||||||||| ||||| || || | | | |||||||| |||||| | | | Sbjct 318060 CTAGTTCTATTTTGTGGGTTTTCTCTCTGAACTGGGGCCATGATTAAGAGGGATGGCCTG 318119 Query 207 GGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTG 266 ||| | ||||| | | |||||||||||||||||| ||||| || | | Sbjct 318120 GGGCATTCGTATTGTGTCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACAGACGAAAG 318179 Query 267 CGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAG 311 ||||||| || |||| |||||||||||||||| ||||| ||| Sbjct 318180 CGAAAGCATTTGACAAGAATGTTTTCATTAATCA-AGAACGGAAG 318223 >seq1850 Length=509225 Score = 105 bits (116), Expect = 1e-20 Identities = 198/283 (70%), Gaps = 15/283 (5%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || | | | | | ||||||||||||||| ||||| Sbjct 396029 ATGCTCTTAGCTGAGTGTCCCGCGGGGTCTGAAGCGTTTACTTTGAAAAAA----AGTGT 396084 Query 98 TCAAAGCAGGCCT--TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGT 155 |||||||||||| | || |||||| ||| |||||||| ||||||||| | |||| Sbjct 396085 TCAAAGCAGGCCCGGTCGCCTGAATACCGCAGCTAGGAATAATGGAATAGGAC-TCCGGT 396143 Query 156 TCTATTTTGT-TGG--TTTCTA---GGACCGCCGTAATGATTAATAGGGATAGTCGGGGG 209 | |||||| | ||| ||||| | || | | || ||| | ||| | | |||||| Sbjct 396144 TATATTTTTTGTGGGTTTTCTCTCTGAACTGGGGCCATAATTTAGAGGAAAGGCCGGGGG 396203 Query 210 TGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGA 269 | ||||| | ||||| |||||||||||| ||||| | | || | Sbjct 396204 CATTCGTATTGTGCCGCTAGAGGCGAAATTCTTGGACCGGCGCAAGACAGATGAAAGCAA 396263 Query 270 AAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 |||| || ||||| |||||||||||||||| ||| |||||| Sbjct 396264 AAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAAAGAAAGT 396305 >seq1877 Length=3067337 Score = 96.9 bits (106), Expect = 6e-18 Identities = 152/212 (72%), Gaps = 7/212 (3%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || | | | | | ||| |||||||||||| ||||||| Sbjct 450412 ATGCTCTTAGCTGAGTGTCCCGTGGGGTCCGAAGCATTTTCTTTGAAAAAATAAGAGTGT 450353 Query 98 TCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTC 157 |||||||| | | || |||||| ||| |||||||| | ||||||| | ||||| Sbjct 450352 TCAAAGCA-GAATACGCCTGAATACCGCAGCTAGGAATAATGGTATAGGAC-TTTGGTTC 450295 Query 158 TATTTTGT-TGGTTTCT---AGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTC 213 |||||||| ||||||| | || | | |||||||| |||| | |||||| | Sbjct 450294 TATTTTGTGGGGTTTCTCTCTGAACTGGGGCCATGATTAAGTGGGACGGCCGGGGGCATT 450235 Query 214 AGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245 |||| | |||||||||||||||||| Sbjct 450234 CATATTGTGCCGCTAGAGGTGAAATTCTTGGA 450203 >seq615 Length=793902 Score = 93.3 bits (102), Expect = 8e-17 Identities = 135/186 (73%), Gaps = 6/186 (3%) Strand=Plus/Plus Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTT---CTAGGACC-GCCGTAA 186 |||||||| ||||||||| | |||||||||||| | ||| || |||| | | | Sbjct 114863 GGAATAATGGAATAGGAC-TCAAGTTCTATTTTGTGGCTTTTCTCTCTGACCTGGGGCCA 114921 Query 187 TGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246 ||||||| |||||| | || ||| | ||||| | |||||||||||||||||| Sbjct 114922 TGATTAAGAGGGATGGCCGTGGGCATTTGTATTGTGCCGCTAGAGGTGAAATTCTTGGAC 114981 Query 247 TTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAAC 306 |||| || | |||||||| || ||||| |||||||||||||||| |||| Sbjct 114982 CGGCGCAAGAGGGACGAAAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAAC 115040 Query 307 GAAAGT 312 |||||| Sbjct 115041 GAAAGT 115046 >seq774 Length=127261 Score = 86.0 bits (94), Expect = 1e-14 Identities = 130/181 (72%), Gaps = 13/181 (7%) Strand=Plus/Minus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT--TTGCTCGAATACATTAGC 128 || ||||||||| |||||| |||||||||||||| | || |||||| ||| Sbjct 100872 ACGTTTACTTTGTAAAAAT------GTTCAAAGCAGGCCCGGTCGCCTGAATACCACAGC 100819 Query 129 ATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTT---CTAGGACC-GCCGT 184 |||||||| |||| |||| | ||||||||||||| ||||| || || | | | Sbjct 100818 TAGGAATAATGGAATGGGAC-TCTGGTTCTATTTTGTGGGTTTTCTCTCTGAACTGGGGC 100760 Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244 |||||||| ||||| | |||||| | |||||| | |||||| |||||||||| Sbjct 100759 CATGATTAAGAGGGACGGCCGGGGGCATTTGTATTCTGCCGCTAGAGGTAAAATTCTTGG 100700 Query 245 A 245 | Sbjct 100699 A 100699 >seq1219 Length=2077268 Score = 80.6 bits (88), Expect = 5e-13 Identities = 87/113 (77%), Gaps = 3/113 (3%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| | | || | | | | | ||||||||||||||||| |||||| Sbjct 604297 ATGCTCTTAGCTGAGTGTCCTGCGGGGTCTGAAGCGTTTACTTTGAAAAAATTTGAGTGT 604356 Query 98 TCAAAGCAGGCC--TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGAC 148 |||||||||||| |||| |||||| ||| | |||||| ||||||||| Sbjct 604357 TCAAAGCAGGCCCGGTTGCCTGAATACCGCAGCTAGTAATAATGGAATAGGAC 604409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915144959872