Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1120 242 2e-61 seq642 122 4e-25 seq346 96.9 1e-17 seq957 93.3 2e-16 seq825 93.3 2e-16 seq196 91.5 6e-16 seq1574 84.2 9e-14 >seq1120 Length=422497 Score = 242 bits (268), Expect = 2e-61 Identities = 227/283 (80%), Gaps = 7/283 (2%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463 || ||||||||| ||||||||||||||||||| |||| | ||||||| ||| | | Sbjct 418291 CGACCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGCGAGTA 418232 Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCG-TGAGGG-TGCACCATCG 520 ||||||| | ||||| ||| ||| || ||||| ||| |||||| |||||| || Sbjct 418231 AACCCGTAAGGCGTAAGGAAGCTGATTGG---TGGGATCCCCCTGAGGGGTGCACCGCCG 418175 Query 521 ACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGA 580 ||||| | |||| | | || || || |||| ||||||| |||| ||||||||||||| Sbjct 418174 ACCGACCTTGATCTTCTGTGAAGGGTTCGAGTGTGAGCATACCTGTCGGGACCCGAAAGA 418115 Query 581 TGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGG 640 ||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||| Sbjct 418114 TGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCGA 418055 Query 641 TTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | ||| ||||||||||| ||||| | |||||||||||||||| Sbjct 418054 TACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 418012 Score = 158 bits (174), Expect = 5e-36 Identities = 134/165 (81%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 || |||||||| |||||||||||||||||| | || ||| ||| |||| | || || || Sbjct 418676 TCTACGAGTCGGGTTGTTTGGGAATGCAGCCCAAATCGGGCGGTGAATTCCGTCCAAGGC 418617 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 |||||| ||| |||||||||||||| ||||||| | || ||||||||||||| |||| Sbjct 418616 TAAATACGGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGAAAAGGACTT 418557 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 || ||||||||| ||| || | ||||||||| | ||||||||| Sbjct 418556 TGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 418512 Score = 149 bits (164), Expect = 3e-33 Identities = 102/115 (89%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 393442 GGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGA 393383 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 393382 GGCCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 393328 Score = 127 bits (140), Expect = 9e-27 Identities = 124/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 394257 GAGTCGGGTTGTTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 394198 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| | | ||||| ||||||| |||||| | Sbjct 394197 ACCGGCACGAGACCGATAGTCGACAAGTACCTTAAGGGAAAGTTGAAAAGAACTTTGAAG 394138 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| ||||| ||| || || Sbjct 394137 AGAGAGTTCAAGAGGGCGTGAAACCGTTGAGAGGTAAACG 394098 >seq642 Length=2242737 Score = 122 bits (134), Expect = 4e-25 Identities = 96/115 (83%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 ||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||| Sbjct 91039 GGACCCGAAAGATGGTGAACTATGCCTAGGCAGGGCAAAGCCAGAGAAAACTCTGGTGGA 91098 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| | |||||| ||| |||||||||| ||||| | ||||||||||| ||| Sbjct 91099 GGCCCATAGCGGTCCTGATGTGCAAATCGGTCGTCCGACCTGGGTATAGGGACGA 91153 >seq346 Length=1846843 Score = 96.9 bits (106), Expect = 1e-17 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 44 CGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTG 103 || ||||||||||||||||| | || |||| |||||| | | |||| |||||||| | Sbjct 1148854 CGGGTTGTTTGGGAATGCAGTCCAAAGTGGGTGGTAAACTCCATCTATGGCTAAATACCG 1148795 Query 104 GCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAG 163 | || ||||||| ||||||| | | ||||| ||||||| ||||| | |||| Sbjct 1148794 GTACAAGGCCGATAGTCGACAAGTACCTTAAGGGAAAGTTGAAAAGAACTTTAAAGAGAG 1148735 Query 164 AGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||| || || ||||||| ||||| ||| || || Sbjct 1148734 AGTTCAAGAGGGCGTGAAACCGTTGAGAGGTAAACG 1148699 >seq957 Length=1366338 Score = 93.3 bits (102), Expect = 2e-16 Identities = 112/151 (74%), Gaps = 1/151 (1%) Strand=Plus/Plus Query 49 TGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAG 108 |||||||||| ||||| | || ||| |||| | | | |||||||||||||| || | Sbjct 432939 TGTTTGGGAAAGCAGCCCAAAGCGGGTGGTATACTCCATCTAAAGCTAAATACCAGCATG 432998 Query 109 AGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTA 168 |||||||||| ||||||| | | ||||| | ||||| |||||| | |||||||| Sbjct 432999 AGACCGATAGTCAACAAGTACCTTAAGGGAAAGGT-AAAAGAACTTTGAAGAGAGAGTTC 433057 Query 169 AAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 || || |||||| ||||| ||| || || Sbjct 433058 AAGAGGGCGTGAAGCCGTTGACAGGTAAACG 433088 >seq825 Length=2160126 Score = 93.3 bits (102), Expect = 2e-16 Identities = 117/160 (73%), Gaps = 8/160 (5%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 1225441 GAGTCGGGTTGTTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 1225500 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| |||||||||| ||||||| | | | || ||||||| |||||| | Sbjct 1225501 ACCGGCACAAGACCGATAGTCGACAAGTACCTTAAGGAACAGTTGAAAAGAACTTTG--A 1225558 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||| || ||||||| ||||| ||| || || Sbjct 1225559 AGAGAG------AGGGCGTGAAACCGTTGAGAGGTAAACG 1225592 >seq196 Length=870183 Score = 91.5 bits (100), Expect = 6e-16 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 72 GGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAG 131 ||| |||||| | | ||||| |||||||| ||| ||||||||||| ||||||| Sbjct 7170 GGGTGGTAAACTCCATCTAAGGCTAAATACCGGCACGAGACCGATAGTCGACAAGTACCT 7111 Query 132 TGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAA 191 | | ||||| ||||||| |||||| | |||||||| || || ||||||| ||||| | Sbjct 7110 TAAGGGAAAGTTGAAAAGAACTTTGAAGAGAGAGTTCAAGAGGGCGTGAAACCGTTGAGA 7051 Query 192 GGGAA 196 || || Sbjct 7050 GGTAA 7046 >seq1574 Length=2840074 Score = 84.2 bits (92), Expect = 9e-14 Identities = 106/144 (74%), Gaps = 5/144 (3%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 669581 GAGTCGGGTTGTTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 669522 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGA-TCGAAAGATGAAAAGCACTTTGGA 158 | | | ||||||||||| || ||||| | | ||||| ||||||| ||| Sbjct 669521 ACCGACACGAGACCGATAGTCCATAAGTACCTTAAGGGGAAAGTTGAAAAGAACT----C 669466 Query 159 AAGAGAGTTAAAAAGCACGTGAAA 182 | |||||| || || ||||||| Sbjct 669465 AGAAGAGTTCAACAGGGCGTGAAA 669442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079870999700