Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= AAMG01000750.1 Length=102 Score E Sequences producing significant alignments: (Bits) Value seq1120 125 3e-27 seq1827 91.5 7e-17 >seq1120 Length=422497 Score = 125 bits (138), Expect = 3e-27 Identities = 89/102 (87%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||| Sbjct 394475 GGAAAAGAAACTAACCAGGATTCCCTCAGTAGCGGCGAGCGAAGAGGGAAGAGCCCAGCA 394416 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 ||||||||||| || ||| || || |||| |||||| ||| Sbjct 394415 CCGAATCCCCGTCCGACGGGCGGACGTGGGAAATGTGGTGTA 394374 Score = 75.2 bits (82), Expect = 5e-12 Identities = 52/59 (88%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGC 59 |||||||||||| || ||||||||| |||||||||||| |||| ||||| |||||||| Sbjct 418879 GGAAAAGAAACTTACAAGGATTCCCCTAGTAACGGCGAGCGAACCGGGAACAGCCCAGC 418821 >seq1827 Length=110269 Score = 91.5 bits (100), Expect = 7e-17 Identities = 81/102 (79%), Gaps = 7/102 (7%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||||||||||||||||||| ||||| || |||||||||||| Sbjct 57253 GGAAAAGAAACTAACCAGGATTCCCTCAGTAGCGGCG-------AGCGAAGAGCCCAGCA 57305 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 |||||||||| || ||| || | |||| |||||| ||| Sbjct 57306 CCGAATCCCCATCCGACGGGCGGACATGGGAAATGTGGTGTA 57347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230387009760