Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq1120 298 9e-79 seq615 176 7e-42 seq1999 167 4e-39 seq1850 159 6e-37 seq276 118 2e-24 seq1150 113 7e-23 seq1133 111 3e-22 seq462 111 3e-22 seq1877 105 1e-20 seq1219 105 1e-20 seq825 98.7 2e-18 seq638 91.5 2e-16 >seq1120 Length=422497 Score = 298 bits (330), Expect = 9e-79 Identities = 223/259 (86%), Gaps = 2/259 (1%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 419878 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 419937 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||| | || ||| | ||||||||||||||||| ||| Sbjct 419938 CCTGTTATTGCCTCAAACTTCCGCGGCCTAAAAGGCCGTAGTCCCTCTAAGAAGCTGGCC 419997 Query 122 ACCAACC-ATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 | || ||| || |||| |||||||| | ||||||||||||||| ||||||| Sbjct 419998 GCGAAGGGATACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATT 420057 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420058 AACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 420117 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| ||| |||||| Sbjct 420118 AAAGAGCTCTCAGTCTGTC 420136 Score = 232 bits (256), Expect = 1e-58 Identities = 201/246 (82%), Gaps = 5/246 (2%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||| |||||||||| |||| | ||||||||||||||||||||||||||||||| || Sbjct 396132 TCAGTGTGGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TC 396190 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCG 135 || || | || || |||| | |||||||||||||| | | || ||| | | Sbjct 396191 AATCT-CGTGTGACTAAGCGCCACTTGTCCCTCTAAGAAGTTGGACGCCGACCGCACGGG 396249 Query 136 ATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATC 192 | | ||| |||||| | |||||||||||||||||||||||||||||||||| Sbjct 396250 GCCGCGTAACTAGTTAGCATGCCGGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATC 396309 Query 193 ACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAA 252 |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| Sbjct 396310 GCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCAA 396369 Query 253 TCTGTC 258 |||||| Sbjct 396370 TCTGTC 396375 >seq615 Length=793902 Score = 176 bits (194), Expect = 7e-42 Identities = 166/208 (80%), Gaps = 3/208 (1%) Strand=Plus/Minus Query 51 GGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTA 110 |||||||||||||||||||||| |||| || | || || |||| | ||||||||| Sbjct 115489 GGCATCACAGACCTGTTATTGC-TCAATCT-CGTGTGACTAAGCGCCACTTGTCCCTCTA 115432 Query 111 AGAAGCCAGCCACCAACCATA-GTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGT 169 |||| | | || | | | | ||| | ||| |||||| | ||||||||||| Sbjct 115431 GGAAGTTGGACGCCGATCGCACGCCGACCGCACTAGTTAGCATGCCGGAGTCTCGTTCGT 115372 Query 170 TATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCA 229 ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| Sbjct 115371 TATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAATGGCCATGCACCACCACCCA 115312 Query 230 TAGAATCAAGAAAGAGCTATCAATCTGT 257 |||||| || |||||||||||||||| Sbjct 115311 CAGAATCGTGACAGAGCTATCAATCTGT 115284 >seq1999 Length=388562 Score = 167 bits (184), Expect = 4e-39 Identities = 97/100 (97%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | Sbjct 161448 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATAC 161389 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||| |||||||||||||||||||||||||||| Sbjct 161388 ACCACCACCCACAGAATCAAGAAAGAGCTATCAATCTGTC 161349 >seq1850 Length=509225 Score = 159 bits (176), Expect = 6e-37 Identities = 106/118 (90%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200 |||| |||||| | ||||||||||||||||| ||||||||||||||| ||||||| Sbjct 396673 GCTAGTTAGCACGCCGGAGTCTCGTTCGTTATCGGGATTAACCAGACAAATTGCTCCACC 396614 Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 396613 AACTTAGAACGGCCATGCACCACCACCCACAGAATCAAGAAAGAGCTATCAATCTGTC 396556 >seq276 Length=864016 Score = 118 bits (130), Expect = 2e-24 Identities = 79/88 (90%), Gaps = 5/88 (6%) Strand=Plus/Minus Query 171 ATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCAT 230 ||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 257685 ATCGGAATTAACCAGACT-----CTCCACCAACTAAGAACGGCCATGCACCACCACCCAC 257631 Query 231 AGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||| |||||||| |||||||||||| Sbjct 257630 AGAATCGAGAAAGAGATATCAATCTGTC 257603 Score = 84.2 bits (92), Expect = 3e-14 Identities = 116/158 (73%), Gaps = 7/158 (4%) Strand=Plus/Plus Query 37 CCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCAT-TGGCTGGAAG 95 |||| ||||| | ||||||| |||||||||||||| |||| | |||| ||||| | | Sbjct 38072 CCAGGACATCAATAGGCATCATAGACCTGTTATTGC-TCAATC--CCATGTGGCTCAACG 38128 Query 96 CCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCG---ATGGGGCTATTTAGCAG 152 ||| | |||||||||| ||| | | |||| | | | | ||| || |||||| Sbjct 38129 CCACTTGTCCCTCTAAAAAGTTGGACGCCAATCGCACTGGGCCATGTAAATAGTTAGCAT 38188 Query 153 GTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAA 190 | | ||||||||||||||| ||||| |||||| ||| Sbjct 38189 GCCAGAGTCTCGTTCGTTATCAGAATTCACCAGAGAAA 38226 >seq1150 Length=869218 Score = 113 bits (124), Expect = 7e-23 Identities = 67/70 (96%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 329553 GTCTTGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGC 329612 Query 219 ACCACCACCC 228 ||||||| || Sbjct 329613 ACCACCAGCC 329622 >seq1133 Length=2349235 Score = 111 bits (122), Expect = 3e-22 Identities = 78/89 (88%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200 |||| |||||| | |||||||| ||||||||||||||||||||||||| ||||||| Sbjct 1650274 GCTAGTTAGCATGCCGGAGTCTCGTTTGTTATCGGAATTAACCAGACAAATCGCTCCACC 1650333 Query 201 AACTAAGAACGGCCATGCACCACCACCCA 229 |||||| |||||||||||||||||| ||| Sbjct 1650334 AACTAAAAACGGCCATGCACCACCAGCCA 1650362 Score = 109 bits (120), Expect = 9e-22 Identities = 62/63 (98%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 195 TCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATC 254 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1650550 TCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCAAGAAAGAGCTATCAATC 1650609 Query 255 TGT 257 ||| Sbjct 1650610 TGT 1650612 >seq462 Length=596058 Score = 111 bits (122), Expect = 3e-22 Identities = 64/66 (97%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 193 ACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAA 252 ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| Sbjct 318533 ACTCCACCAACTAAGAACGGCCATGCACCACTACCCACAGAATCAAGAAAGAGCTATCAA 318474 Query 253 TCTGTC 258 |||||| Sbjct 318473 TCTGTC 318468 >seq1877 Length=3067337 Score = 105 bits (116), Expect = 1e-20 Identities = 61/63 (97%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 196 CCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCT 255 |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 449856 CCACTAACTAAGAACGGCCATGCACCACCACCCACAGAATCAAGAAAGAGCTATCAATCT 449915 Query 256 GTC 258 ||| Sbjct 449916 GTC 449918 >seq1219 Length=2077268 Score = 105 bits (116), Expect = 1e-20 Identities = 63/66 (95%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 193 ACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAA 252 || |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| Sbjct 604817 ACCCCACCAACTAAGAACGGCCATGCACCACTACCCACAGAATCAAGAAAGAGCTATCAA 604758 Query 253 TCTGTC 258 |||||| Sbjct 604757 TCTGTC 604752 Score = 105 bits (116), Expect = 1e-20 Identities = 76/88 (86%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200 |||| |||||| | |||| |||||| ||||||||||||||||||||||||| |||| Sbjct 605088 GCTAGTTAGCATACCAGAGTCTTGTTCGTCATCGGAATTAACCAGACAAATCACTACACC 605029 Query 201 AACTAAGAACGGCCATGCACCACCACCC 228 || |||||||||||||||||||||| || Sbjct 605028 AAATAAGAACGGCCATGCACCACCAGCC 605001 >seq825 Length=2160126 Score = 98.7 bits (108), Expect = 2e-18 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| ||| || | | ||||||| | |||||| |||||||||||| ||||| || ||||| Sbjct 1113761 CTAGTTAACATGCTGGGGTCTCGCTTGTTATCAGAATTAACCAGAGAAATCGCTGCACCA 1113702 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||| ||| ||||| |||||| | | ||||||||| ||||||| || || |||| Sbjct 1113701 GCTAATAACAGCCATACACCACTGTCAACAGAATCAAGGAAGAGCTCTCCATTTGTC 1113645 >seq638 Length=1997749 Score = 91.5 bits (100), Expect = 2e-16 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200 |||| |||||| | | |||| |||||| ||| ||||||||||||||||| ||| ||| Sbjct 327120 GCTAGTTAGCATGCCGAAGTCTTGTTCGTCATCAGAATTAACCAGACAAATTGCTCTACC 327179 Query 201 AACTAAGAACGGCCATGCACCACCACCC 228 |||||||||| || ||||||||||| || Sbjct 327180 AACTAAGAACAGCAATGCACCACCAGCC 327207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796753577934