Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq1120 403 3e-110 seq955 349 6e-94 seq1416 343 3e-92 seq615 331 2e-88 seq1802 273 4e-71 seq85 197 2e-48 seq880 174 3e-41 seq112 150 3e-34 seq6010 134 2e-29 seq1492 132 8e-29 seq1903 123 4e-26 seq3377 120 5e-25 seq1327 109 9e-22 seq211 75.2 2e-11 >seq1120 Length=422497 Score = 403 bits (446), Expect = 3e-110 Identities = 266/293 (91%), Gaps = 1/293 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| |||| | | || ||||||||||||||||||||||||||||||| Sbjct 415909 TACTAGGTTGAATTACTATTGCGAC-ACTGTCATCAGTAGGGTAAAACTAACCTGTCTCA 415967 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| || Sbjct 415968 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 416027 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 416028 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 416087 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 416088 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 416147 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | |||| ||| || ||||||||||| |||||||| |||||| |||| |||||| Sbjct 416148 CGAATTCCGAAGGTCTAAAGGATCGTTAGGCCACGCTTTCACGGTTCGTATTC 416200 Score = 343 bits (380), Expect = 3e-92 Identities = 254/295 (86%), Gaps = 1/295 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | || ||||||||||||||||||||||||||||| Sbjct 390941 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 391000 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 391001 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 391060 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 391061 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 391120 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 391121 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 391180 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 | ||| | | | |||||||| ||||| | |||||| ||| |||||||| Sbjct 391181 TAAAACCCAAAAAGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTCA 391235 >seq955 Length=1244481 Score = 349 bits (386), Expect = 6e-94 Identities = 255/295 (86%), Gaps = 1/295 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | || ||||||||||||||||||||||||||||| Sbjct 1215344 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 1215285 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1215284 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 1215225 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1215224 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 1215165 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 1215164 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 1215105 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 | ||| | | | |||||||| ||||| |||||||| ||| |||||||| Sbjct 1215104 TAAAACCCAAAAAGTCAGAAGGATCGTGAGGCCCCACTTTCACGGTCTGTATTCA 1215050 >seq1416 Length=719161 Score = 343 bits (380), Expect = 3e-92 Identities = 254/295 (86%), Gaps = 1/295 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | || ||||||||||||||||||||||||||||| Sbjct 378204 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 378145 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 378144 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 378085 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 378084 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 378025 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 378024 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 377965 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 | ||| | | | |||||||| ||||| | |||||| ||| |||||||| Sbjct 377964 TAAAACCCAAAAAGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTCA 377910 >seq615 Length=793902 Score = 331 bits (366), Expect = 2e-88 Identities = 251/295 (85%), Gaps = 1/295 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | || ||||||||||||||||||||||||||||| Sbjct 117423 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 117364 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 117363 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 117304 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||| Sbjct 117303 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTTGCTA 117244 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 ||||||||| || ||||||||||||||||||||||||| ||||||||| |||||| || Sbjct 117243 TGAACGCTTTGCCGCCACAAGCCAGTTATCCCTGTGGTTACTTTTCTGACACCTCCTGCG 117184 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 | ||| | | | ||||||| ||||| | |||||| ||| |||||||| Sbjct 117183 TAAAACCCAAAAAGTCAGAAGGATCATGAGGCCCCGCTTTCACGGTCTGTATTCA 117129 >seq1802 Length=2725927 Score = 273 bits (302), Expect = 4e-71 Identities = 183/203 (90%), Gaps = 1/203 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | || ||||||||||||||||||||||||||||| Sbjct 994902 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 994843 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 994842 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 994783 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 994782 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 994723 Query 180 TGAACGCTTGGCTGCCACAAGCC 202 |||||||||||| |||||||||| Sbjct 994722 TGAACGCTTGGCCGCCACAAGCC 994700 Score = 73.4 bits (80), Expect = 7e-11 Identities = 60/73 (82%), Gaps = 4/73 (5%) Strand=Plus/Plus Query 166 AAGCAACGTCGCTATGAACGCTTG----GCTGCCACAAGCCAGTTATCCCTGTGGTAACT 221 |||| ||||||||||||||||||| || | |||| |||||||||||||| ||| ||| Sbjct 631023 AAGCGACGTCGCTATGAACGCTTGCTCGGCCGTCACAGGCCAGTTATCCCTGCGGTGACT 631082 Query 222 TTTCTGGCACCTC 234 | || | |||||| Sbjct 631083 TCTCAGACACCTC 631095 >seq85 Length=1194935 Score = 197 bits (218), Expect = 2e-48 Identities = 130/144 (90%), Gaps = 5/144 (3%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAA-----CCCAGCTCACGTT 85 |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 1159490 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAAGTTAACCCAGCTCACGTT 1159431 Query 86 CCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGA 145 |||||||||||| ||||||||||||||||| |||||| ||||| |||||||||||| Sbjct 1159430 CCCTATTAGTGGTTGAACAATCCAACGCTTGGTGAATTCAGCTTCACAATGATAGGAAGA 1159371 Query 146 GCCGACATCGAAGGATCAAAAAGC 169 |||||||||||||||||||||||| Sbjct 1159370 GCCGACATCGAAGGATCAAAAAGC 1159347 >seq880 Length=965080 Score = 174 bits (192), Expect = 3e-41 Identities = 125/143 (87%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | || ||||||||||||||||||||||||||||| Sbjct 631365 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 631306 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 631305 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 631246 Query 120 AATTCTGCTTCGGTATGATAGGA 142 ||||||||||| ||||||||| Sbjct 631245 AATTCTGCTTCACAATGATAGGA 631223 >seq112 Length=532252 Score = 150 bits (166), Expect = 3e-34 Identities = 118/141 (84%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 154 CGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTG 213 |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| Sbjct 524399 CGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTG 524458 Query 214 TGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCA 273 |||||||||||||| |||||| || | ||| | | | |||||||| ||||| Sbjct 524459 TGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAAGTCAGAAGGATCGTGAGGCCC 524518 Query 274 CACTTTCATGGTTTGTATTCA 294 | |||||| ||| |||||||| Sbjct 524519 CGCTTTCACGGTCTGTATTCA 524539 >seq6010 Length=2763283 Score = 134 bits (148), Expect = 2e-29 Identities = 102/119 (86%), Gaps = 1/119 (1%) Strand=Plus/Minus Query 42 GTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT-AGTGGGTG 100 ||||||||||||||||||| | ||||||||||||| ||||| |||||| || ||||| Sbjct 769336 GTAAAACTAACCTGTCTCACGGCGGTCTAAACCCAACTCACATTCCCTTTTTAGTGGCCA 769277 Query 101 AACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGG 159 ||||||||||||||| |||||||||||| || ||||||| ||||||||||||||| Sbjct 769276 AACAATCCAACGCTTGGTGAATTCTGCTTCACAATAATAGGAACAGCCGACATCGAAGG 769218 >seq1492 Length=1075607 Score = 132 bits (146), Expect = 8e-29 Identities = 122/158 (77%), Gaps = 20/158 (13%) Strand=Plus/Minus Query 66 GTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCT 125 |||||||||||||||||||||||| |||||| |||| ||||| ||| Sbjct 147091 GTCTAAACCCAGCTCACGTTCCCTGTTAGTGAGTGACCAATC---------------TCT 147047 Query 126 GCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACG 185 ||| | ||| |||||| ||| ||||| || |||||| ||||| || |||||| | Sbjct 147046 GCTACACAATGTTAGGAAAAGCTGACATGGACGGATCACAAAGCGAC-----TATGAATG 146992 Query 186 CTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTT 223 ||||||||||||||||||||||||||||||| |||||| Sbjct 146991 CTTGGCTGCCACAAGCCAGTTATCCCTGTGGGAACTTT 146954 >seq1903 Length=1067412 Score = 123 bits (136), Expect = 4e-26 Identities = 106/130 (82%), Gaps = 1/130 (1%) Strand=Plus/Minus Query 74 CCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGT 133 ||||||||||||||||| ||||||||||||||||||| |||| ||| |||||||| Sbjct 939622 CCAGCTCACGTTCCCTAGTAGTGGGTGAACAATCCAATGCTTGGTGAACTCTGCTTCACA 939563 Query 134 ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTG 193 ||||| | | | |||||||| ||||||||||| | ||||| |||||||||||| Sbjct 939562 ATGAT-GACATCGATGACATCGATGGATCAAAAAGTGATGTCGCATTGAACGCTTGGCCA 939504 Query 194 CCACAAGCCA 203 |||||||||| Sbjct 939503 CCACAAGCCA 939494 Score = 104 bits (114), Expect = 4e-20 Identities = 100/130 (77%), Gaps = 10/130 (8%) Strand=Plus/Minus Query 74 CCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGT 133 ||||||||||||||||| ||||||||||||||||||| |||| ||| |||||||| Sbjct 939317 CCAGCTCACGTTCCCTAGTAGTGGGTGAACAATCCAATGCTTGGTGAACTCTGCTTCACA 939258 Query 134 ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTG 193 ||||| |||||||| |||| |||||| | || || |||||||||||| Sbjct 939257 ATGAT----------GACATCGATGGATTAAAAAGTGATGTGGCATTGAACGCTTGGCCA 939208 Query 194 CCACAAGCCA 203 ||||||| || Sbjct 939207 CCACAAGTCA 939198 >seq3377 Length=1741530 Score = 120 bits (132), Expect = 5e-25 Identities = 77/84 (92%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||||| |||||||||||||||||| ||| |||||||||| |||||||||||||| |||| Sbjct 1034271 CATCATCAGGGTAAAACTAACCTGTTTCACGACGGTCTAATCCCAGCTCACGTTCACTAT 1034330 Query 92 TAGTGGGTGAACAATCCAACGCTT 115 ||||||||||||||||||| |||| Sbjct 1034331 TAGTGGGTGAACAATCCAAGGCTT 1034354 >seq1327 Length=1883937 Score = 109 bits (120), Expect = 9e-22 Identities = 128/177 (72%), Gaps = 22/177 (12%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||| ||||||||| || ||||||| | |||||| ||| |||||||||||||| Sbjct 345897 TCATCAGTACGGTAAAACTTACTTGTCTCACGGCGGTCTGAACTGAGCTCACGTTCCCTG 345838 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 || ||| ||||| | |||| ||||| |||||||| | Sbjct 345837 TTT-------------------CTT---GAATTTTCCTTCACAATGATTCGAAGAGCCAA 345800 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTA 207 |||| || ||| ||| || ||||| || ||||||||||||||||||||||| |||| Sbjct 345799 CATCTAACCATCGAAACGCGACGTCACTGTGAACGCTTGGCTGCCACAAGCCGGTTA 345743 >seq211 Length=1735489 Score = 75.2 bits (82), Expect = 2e-11 Identities = 55/64 (86%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 35 CAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAG 94 ||| | ||||| |||||||||||||| ||||||||| ||||||||| ||| |||||||| Sbjct 217811 CAGAACGGTAAGACTAACCTGTCTCACAACGGTCTAATCCCAGCTCAAGTTTCCTATTAG 217870 Query 95 TGGG 98 | || Sbjct 217871 TTGG 217874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854348616384