Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq1120 84.2 3e-14 seq669 77.0 4e-12 seq1877 73.4 5e-11 >seq1120 Length=422497 Score = 84.2 bits (92), Expect = 3e-14 Identities = 80/100 (80%), Gaps = 3/100 (3%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||| ||||||||| || | ||||||||| |||||||| ||| |||||| |||| Sbjct 396771 AAACCCACAAAATAGAACCGGA-GTCCTATTCCATTATTCCTAGCTGCGGTATTCAGGCG 396829 Query 70 TAAG--CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 | ||||||||||||||||||||||| |||| ||||| Sbjct 396830 ACCGGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAA 396869 Score = 75.2 bits (82), Expect = 1e-11 Identities = 77/98 (79%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 ||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 420531 CCAACGTAATAGGACCGAAA-TCCTATAATGTTATCCCATGCTAATGTATACAGAGCGTA 420589 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| ||||||||||| |||| |||| || Sbjct 420590 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 420627 >seq669 Length=1139874 Score = 77.0 bits (84), Expect = 4e-12 Identities = 71/88 (81%), Gaps = 3/88 (3%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||| ||||||||| || | ||||||||| |||||||| ||| |||||| |||| Sbjct 560568 AAACCCACAAAATAGAACCGGA-GTCCTATTCCATTATTCCTAGCTGCGGTATTCAGGCG 560510 Query 70 T--AAGCCTGCTTTGAACACTCTAATTT 95 | ||||||||||||||||||||||| Sbjct 560509 AGCAGGCCTGCTTTGAACACTCTAATTT 560482 >seq1877 Length=3067337 Score = 73.4 bits (80), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 3/101 (3%) Strand=Plus/Plus Query 8 AGAAACCA-ACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG 66 ||||||| ||||||||| || | ||||||| | |||||||| ||| |||||| | Sbjct 450278 AGAAACCCCACAAAATAGA-ACCAAAGTCCTATACCATTATTCCTAGCTGCGGTATTCAG 450336 Query 67 GCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 ||||| | ||||||||||||||| ||||| |||| | ||| Sbjct 450337 GCGTATTC-TGCTTTGAACACTCTTATTTTTTCAAAGAAAA 450376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595165323276