Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq1120 127 2e-27 seq669 80.6 3e-13 >seq1120 Length=422497 Score = 127 bits (140), Expect = 2e-27 Identities = 139/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 420627 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 420568 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | |||| ||||| || || | ||| || ||||||| Sbjct 420567 GGGATAACATTATAGGATTT-CGGTCCTATTACGTTGGCCTTCGGGATCGGA-GTAATGA 420510 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 420509 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 420450 Query 190 T 190 | Sbjct 420449 T 420449 Score = 102 bits (112), Expect = 8e-20 Identities = 131/178 (74%), Gaps = 6/178 (3%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC--TTTGCTCGAATACATTACCATG 70 ||||||||||||||||||||| |||||||||||||| | || |||||| | | | Sbjct 396869 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGGTCGCCTGAATACCGCAGCTAG 396810 Query 71 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTT---TCTAGGACCGCCCGTAAT 127 ||||||| ||||||||| | |||||||||||||| |||| ||| || | | || Sbjct 396809 GAATAATGGAATAGGAC-TCCGGTTCTATTTTGTGGGTTTTCTCTCTGAACTGGGGCCAT 396751 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 ||| || | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 396750 GATTAAGAGGGACGGCCGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 396693 >seq669 Length=1139874 Score = 80.6 bits (88), Expect = 3e-13 Identities = 72/88 (82%), Gaps = 3/88 (3%) Strand=Plus/Plus Query 25 AAATTAGAGCGTTCAAAGCAGGCCT--TTGCTCGAATACATTACCATGGAATAATAGAAT 82 ||||||||| ||||||||||||||| | || |||||| | | |||||||| |||| Sbjct 560482 AAATTAGAGTGTTCAAAGCAGGCCTGCTCGCCTGAATACCGCAGCTAGGAATAATGGAAT 560541 Query 83 AGGACGTGCGGTTCTATTTTGTAGGTTT 110 ||||| | |||||||||||||| ||||| Sbjct 560542 AGGAC-TCCGGTTCTATTTTGTGGGTTT 560568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511970170560