Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq1120 309 6e-82 seq880 138 2e-30 seq615 95.1 2e-17 >seq1120 Length=422497 Score = 309 bits (342), Expect = 6e-82 Identities = 262/318 (82%), Gaps = 16/318 (5%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCG------CTTTGGCGGGTCGCCGGCT 73 || |||||||| | |||||||| |||| | || | || |||| || ||| Sbjct 420045 GAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGTATCCCTTCGCGG----CCAGCT 419990 Query 74 TCTTAGAGGGACTATCGGC---TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| |||| | | |||| |||||||||||||||||||||||||||| Sbjct 419989 TCTTAGAGGGACTA-CGGCCTTTTAGGCCGC-GGAAGTTTGAGGCAATAACAGGTCTGTG 419932 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||||||||||||||||||||||||||||| | ||||||||| || Sbjct 419931 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTTTATAG 419872 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||||||||| ||| | |||||||||| | ||| | ||||| |||||||||| ||||| Sbjct 419871 CCTTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTG 419813 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||| ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| | Sbjct 419812 CAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACT 419753 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 419752 ACGTCCCTGCCCTTTGTA 419735 Score = 188 bits (208), Expect = 1e-45 Identities = 199/258 (77%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | || | || | ||||| |||||||||||||||| Sbjct 396229 CTTCTTAGAGGGACAAGTGGCGCTTAGTCACACGA-GATTGAG-CAATAACAGGTCTGTG 396172 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||||||| ||||||| | || || || | Sbjct 396171 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACACTGAGTGGATCAGCGTGTGTCTAC 396112 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 |||| |||| ||| ||||||| | | || | | ||||| | ||||| | | |||| Sbjct 396111 CCTTCGCCGAGAGGCGTGGGTAACCCGCTGAACCCCACTCGTGATAGGGATTGGGGATTG 396052 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||||||| ||||| ||| |||||||||| Sbjct 396051 CAATTATTTCCCATGAACGAGGAATTCCCAGTAAGCGCGGGTCATAAGCTCGCGTTGATT 395992 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 395991 AAGTCCCTGCCCTTTGTA 395974 >seq880 Length=965080 Score = 138 bits (152), Expect = 2e-30 Identities = 164/220 (75%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 109 TTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACT 168 ||||| || ||||||||||||||||||||||||||| | |||| ||||| || ||||| Sbjct 630778 TTGAG-CAGTAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGTGCC--ACACT 630834 Query 169 GACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTG 228 || | || | || | |||| || ||| ||||||| | | || | | Sbjct 630835 GAGTGGATCAGTGTGTGTCTACCCTTCACCAAGAGGCGTGGGTAACCCGCTGAACCCCAC 630894 Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288 ||||| | ||||| | | |||||||||||| | | | ||| |||||| | |||||||| Sbjct 630895 TCGTGATAGGGATTGGGGATTGCAATTATTTCCCATGAACAAGGAATTTCCAGTAAGCGT 630954 Query 289 GTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||||| ||| ||||||||||| |||||||||||||||| Sbjct 630955 GGGTCATAAGCTCGCGTTGATTAAGTCCCTGCCCTTTGTA 630994 >seq615 Length=793902 Score = 95.1 bits (104), Expect = 2e-17 Identities = 167/245 (68%), Gaps = 25/245 (10%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCC--------------CTTAGATGTTCTGGGC 151 || ||||| ||||||||||||||||||||| || ||||| | |||| Sbjct 115461 AGATTGAG-CAATAACAGGTCTGTGATGCCTGTGATGCCCAGGTCTGTGATGTCCGGGGC 115519 Query 152 CGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGT 211 |||||||| ||||||| | || || || | |||| |||| ||| |||| Sbjct 115520 T--ACGCGCGCCACACTGAGTGGATCAGCGTGTGTCTACCCTTCGCCGAGAGGCGTGGGC 115577 Query 212 AATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAG 271 || | | || | | | ||| | ||||| | | |||||||||||| ||| | |||| | Sbjct 115578 AACCCGCTGAACCCCACTTGTGATAGGGATTGGGGATTGCAATTATTTCTCATGAACGTG 115637 Query 272 GAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA--------TTACGTCCCTGCCCT 323 ||| || |||||||||| ||||| ||| | |||||| | | ||||||||||| Sbjct 115638 AAATTCCCAGTAAGCGCGGGTCATAAGCTCACGTTGAGCTCAAGCTCAAGTCCCTGCCCT 115697 Query 324 TTGTA 328 ||||| Sbjct 115698 TTGTA 115702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947143035392