Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq1120 695 0.0 seq241 212 2e-52 seq1802 116 1e-23 seq1416 116 1e-23 seq112 116 1e-23 seq955 111 5e-22 seq615 105 2e-20 seq1528 87.8 6e-15 seq1140 84.2 7e-14 >seq1120 Length=422497 Score = 695 bits (770), Expect = 0.0 Identities = 477/532 (90%), Gaps = 7/532 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| || || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 416234 CTTCTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 416293 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||| || |||||||||||||||||||||||||||||| || |||||||| Sbjct 416294 TTTTAACAGATGTCCCCCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATC 416353 Query 127 GGCCCGCGAAGGA--CCTTAACGCCAGAAA-ATGGTCGGTGAAGACCAGTTCCGCTTCAT 183 |||| || ||| | |||| ||| ||| | || | ||| || ||||| |||| Sbjct 416354 GGCCTGC-AAGCAAGCCTTGGGTCCAAAAAGAGGGGCAGTGCC--CCGCTTCCGATTCAC 416410 Query 184 TGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCAC 243 || ||||||||| |||| ||| ||||||||||||||||| |||| |||||||||| Sbjct 416411 GGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTTCGCCTTT-CGGCTCCCAC 416469 Query 244 TTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 303 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 416470 TTATACTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 416529 Query 304 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 363 |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct 416530 TTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAG 416589 Query 364 ATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 423 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 416590 ACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 416649 Query 424 ATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATT 483 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 416650 ATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATT 416709 Query 484 TCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 ||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 416710 TCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTAAACATC 416761 Score = 587 bits (650), Expect = 2e-165 Identities = 457/540 (85%), Gaps = 15/540 (3%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| |||| | ||||||||||||||||||| Sbjct 391268 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACC 391327 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||| ||| ||||||||| ||||||||||||||| || |||| | ||| || Sbjct 391328 GTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGCCACTGTCCCCGGAGCGGGTC 391387 Query 127 G-GCCCGCGAAGGAC-----CTTAACGCCAGAA---AATGGTCGGTGAAGACCAGTT--- 174 ||||| || | ||| ||||||||| | | || | | | | Sbjct 391388 ACGCCCGGCGGGGCCGGGCGCTTGACGCCAGAAGCGAGAGCCCGCTCGGGGCTCGCCTCC 391447 Query 175 CCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-CCGAAA 233 |||| ||| | ||||| ||||||||||||| ||||||||||||||| ||| |||| Sbjct 391448 CCGCCTCACCGGGTAAGTGAAAAAACGATAAGAGTAGTGGTATTTCACCGGCGGCCGAGG 391507 Query 234 CGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCT 293 | |||||||||||||||||||||||| ||| |||||| | | ||||||||||||||| Sbjct 391508 C--CTCCCACTTATTCTACACCTCTCATGTCTCTTCACAGTGCCAGACTAGAGTCAAGCT 391565 Query 294 CAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 353 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 391566 CAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 391625 Query 354 TAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 413 |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 391626 TAGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAG 391685 Query 414 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCT 473 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 391686 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCT 391745 Query 474 TGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 391746 TCATTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 391805 >seq241 Length=920797 Score = 212 bits (234), Expect = 2e-52 Identities = 147/168 (88%), Gaps = 8/168 (5%) Strand=Plus/Minus Query 292 CTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTC 351 |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| Sbjct 213893 CTCAACAGGGTCTTCTTTCCACGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTT 213834 Query 352 GCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATT 411 |||||||||||| || | || ||||||| |||||||||||| | ||||||||| Sbjct 213833 GCTAGATAGTAGGTA--------GAGAGTCTCGTTCATCCATTCATGCACATCACTAATT 213782 Query 412 AGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGC 459 ||||||||||||||||| | |||||||||||||||||||||||| || Sbjct 213781 AGATGACGAGGCATTTGTCGGCCTTAAGAGAGTCATAGTTACTCCTGC 213734 >seq1802 Length=2725927 Score = 116 bits (128), Expect = 1e-23 Identities = 90/107 (84%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| |||| | ||||||||||||||||||| Sbjct 994645 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACC 994586 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 |||| |||| ||| ||||||||| ||||||||||||||| || |||| Sbjct 994585 GTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGCCACTGTC 994539 >seq1416 Length=719161 Score = 116 bits (128), Expect = 1e-23 Identities = 90/107 (84%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| |||| | ||||||||||||||||||| Sbjct 377877 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACC 377818 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 |||| |||| ||| ||||||||| ||||||||||||||| || |||| Sbjct 377817 GTTTTACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGCCACTGTC 377771 >seq112 Length=532252 Score = 116 bits (128), Expect = 1e-23 Identities = 90/107 (84%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| |||| | ||||||||||||||||||| Sbjct 524572 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACC 524631 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 |||| |||| ||| ||||||||| ||||||||||||||| || |||| Sbjct 524632 GTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGCCACTGTC 524678 >seq955 Length=1244481 Score = 111 bits (122), Expect = 5e-22 Identities = 89/107 (83%), Gaps = 4/107 (4%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| |||| ||||||||||||||||||| Sbjct 1215017 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAG----CCTTAGGACACCTGCGTTACC 1214962 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 |||| |||| ||| ||||||||| ||||||||||||||| || |||| Sbjct 1214961 GTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGCCACTGTC 1214915 >seq615 Length=793902 Score = 105 bits (116), Expect = 2e-20 Identities = 89/108 (82%), Gaps = 1/108 (1%) Strand=Plus/Minus Query 7 CTTTTGCT-CTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTAT 65 ||| |||| | ||||||| ||||||| |||| |||| | ||||||||||||||| ||| Sbjct 117096 CTTCTGCTTCCACAGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCATTAC 117037 Query 66 GGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| |||| ||| ||||||||| ||||||||||||||| || |||| Sbjct 117036 TATTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGCCACTGTC 116989 >seq1528 Length=988012 Score = 87.8 bits (96), Expect = 6e-15 Identities = 73/90 (81%), Gaps = 7/90 (8%) Strand=Plus/Plus Query 324 CCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTC 383 |||| | |||| ||||||||||||||| ||||| ||||||||||||||||||| Sbjct 148709 CCAAATCAGTTCACTTGGCTGTGGTTTCACTAGA-------TAGGGACAGTGGGAATCTC 148761 Query 384 GTTAATCCATTCATGCGCGTCACTAATTAG 413 ||| |||||||||||| | || ||||||| Sbjct 148762 GTTCATCCATTCATGCATGCCAGTAATTAG 148791 >seq1140 Length=734468 Score = 84.2 bits (92), Expect = 7e-14 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 478 TGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||| | |||||||||||||||| |||||||||||||| ||||||| Sbjct 350677 TGAATTTCTTCACTATTACATTCAGAGCACTGGACAGAAATCACATTGTGTCAACA 350732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635101659072