Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq265 199 3e-46 seq1140 102 6e-17 >seq265 Length=606166 Score = 199 bits (220), Expect = 3e-46 Identities = 394/574 (69%), Gaps = 8/574 (1%) Strand=Plus/Plus Query 66005 AGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGC-GGTATACTCGACAAT 66063 ||||| | || || || || ||||| |||| |||||| | || ||| || || || || Sbjct 296224 AGGGCGATGGAGGCCAGATTACAGACCGCTACCTCGTC-GTCGCTGGTGTATTCAACGAT 296282 Query 66064 TTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATT 66123 ||| ||||| || || |||| || ||||||| |||||| || || ||||| || || Sbjct 296283 TTCTGTGCAGAGGTTGCTGCTTTTGATTGTGCCCAGATTCTGCTGGTTGCTCTTTCGGTT 296342 Query 66124 GCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGC 66183 ||| || || ||||||| ||||||||| |||||||| || |||||||| || ||||| Sbjct 296343 GCAGGCGTCTTTGTACAGCATGTACGGCGTGCCGGTTTCTGTCTGGGACTCGATAATGGC 296402 Query 66184 GTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGTTCGTA-ATG-T 66241 |||||| | | ||||||||| ||| |||| || | | ||| | ||| Sbjct 296403 GTGCCACACCTGCTGAGCCTTCACCACACGCTTGACCCTCCCCT--CCTTCTCATATGAA 296460 Query 66242 TCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGA 66301 |||||| | || || |||||||| ||| ||| | ||||||| | ||| Sbjct 296461 GTGTAGAGCTTCTCAAACTCCTCACCCCAACACTCGTCCAGCCCGGGACACTCATTGGGA 296520 Query 66302 CACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAG 66361 |||||||| ||||| || | ||| || | ||| || | || || ||||| Sbjct 296521 CACATCAGAGACCAGTCTTGGTTGCTTTCCACTCTCTTCATGAACAAGTCGGGGATCCAC 296580 Query 66362 AGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCC-GTGATTTTTGCGCAAGTC 66420 ||||||||||| || || | || | |||||||| | || ||| || || || || Sbjct 296581 AGGGCGTAGAAAAGGTCTCTGGCCCTCTGCTCCTCCTTTCCTGTG-TTCTTCTTCAGCTC 296639 Query 66421 GAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACG 66480 ||||| ||||| | ||| ||||| || |||||||| |||||||| | || | Sbjct 296640 CAGGAAGTCAAACACGTCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCT 296699 Query 66481 TTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTAC 66540 |||| ||| || |||||||| || || || |||||| | || | || ||| || || Sbjct 296700 TTTGTTGCCGCCCTGGTCGACATAACGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGAC 296759 Query 66541 GAGCCCGTTAGATTTGCCATTGGTGCCGTCGATG 66574 | |||||| || ||||| || |||||| | ||| Sbjct 296760 TAACCCGTTTGAGTTGCCGTTTGTGCCGGCAATG 296793 >seq1140 Length=734468 Score = 102 bits (112), Expect = 6e-17 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 66050 GTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGA 66109 || ||||| || || || |||||||| || ||| | |||||||||| ||||| || Sbjct 320375 GTGTACTCTACGATCTCTGTGCACAGGTTGCTGGATTTGATGGTGCCCAGGTTCTGCTGG 320434 Query 66110 TTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGG 66169 || ||||| | |||||| ||||||||||| | ||||||||| || || || || || Sbjct 320435 TTGCTCTTCCCATTGCAGGCATCCTTGTAAAGCATGTACGGGGTTCCCGTTTCCGTCTGA 320494 Query 66170 GACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACC 66208 ||||| |||||||| | ||| || | ||||||||| Sbjct 320495 GACTCGATGATGGCATACCACAGCTGCTGAGCCTTCACC 320533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397538860004960