Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09] 3,808 sequences; 668,481,366 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2387 206 2e-48 seq963 132 4e-26 seq375 132 4e-26 seq52 132 4e-26 seq689 118 8e-22 seq678 118 8e-22 seq1563 102 6e-17 seq2122 86.0 5e-12 >seq2387 Length=643009 Score = 206 bits (228), Expect = 2e-48 Identities = 387/564 (69%), Gaps = 6/564 (1%) Strand=Plus/Minus Query 66014 GATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCAC 66073 || || || || ||||| |||| ||| || ||| || || || ||||| ||||| Sbjct 87470 GAGGCCAGATTACAGACCGCTACCTCATCCTCGCTGGTGTATTCAACGATTTCTGTGCAG 87411 Query 66074 AGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCC 66133 || || ||||| |||||||||| ||||| || || ||||| | ||||| || || Sbjct 87410 AGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCT 87351 Query 66134 TTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGA 66193 ||||||| |||||| || || ||||| || |||||||| || ||||||| ||| || Sbjct 87350 TTGTACAGCATGTATGGTGTACCGGTTTCTGTCTGGGACTCGATAATGGCGTACCACAGC 87291 Query 66194 GCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGT 66253 | ||||||||| || |||| || | ||||| | |||||| | Sbjct 87290 TGCTGAGCCTTCACCACTCGCTTGACCCTCCCCTCCTTCTCGTATTTGGTGTAGAGCTCC 87231 Query 66254 TCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGAC 66313 ||||| || ||||| ||| ||| | || |||| || ||||||||||| ||| Sbjct 87230 TCGAACTCCTCTCCCCAGCACTCGTCCAGCCCGGGGCACTCGTTCGGACACATCAGGGAC 87171 Query 66314 CAATCACCATCCTGTTCTACACGACG--CATAAATAGATCAGGTATCCAGAGGGCGTAGA 66371 || || | || ||| ||| ||| || | || || ||||| |||||||||| Sbjct 87170 CAGTCTTGGT--TGCTCTCCACCCTCTTCATGAACAAGTCGGGGATCCACAGGGCGTAGA 87113 Query 66372 AGAGATCGCGTGCTCGTTGCTCCTCAATGCC-GTGATTTTTGCGCAAGTCGAGGAACTCA 66430 | ||||| | |||| ||||||||| | || ||| || || || || ||||| || Sbjct 87112 AAAGATCTCTGGCTCTTTGCTCCTCCTTCCCTGTG-TTCTTCTTCAGCTCCAGGAAGTCG 87054 Query 66431 AAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCA 66490 || | ||| |||||||| |||||||| |||||||| | || | ||| |||| Sbjct 87053 AAAACGTCAAAGTGCCATGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTCTTGTTGCCA 86994 Query 66491 CCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTA 66550 || ||||||||||| || || |||||| | || | || ||| || || |||||||| Sbjct 86993 CCCTGGTCGACGTAACGGGCCGTGTTGTTGTAAACTCTCAGCATGGGGACCAGCCCGTTG 86934 Query 66551 GATTTGCCATTGGTGCCGTCGATG 66574 || ||||||||||| ||| | ||| Sbjct 86933 GAATTGCCATTGGTTCCGGCAATG 86910 >seq963 Length=229635 Score = 132 bits (146), Expect = 4e-26 Identities = 103/123 (84%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| | ||||| ||||| ||| | ||||| | ||||||||||||||||||| Sbjct 212152 TGGAGCGCTTCACACAGGAAGTGCAGGTGACTGAGGCCAGGTGTTTCTACGGCTTCCAGA 212211 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | ||||||||||| ||||||||||||||||||| | |||||||| || ||||||| || Sbjct 212212 TCGCCATGGAGAACATCCACTCGGAGATGTACAGCCTCCTCATCGACACCTACATCAAGG 212271 Query 61376 AGC 61378 ||| Sbjct 212272 AGC 212274 >seq375 Length=30079 Score = 132 bits (146), Expect = 4e-26 Identities = 103/123 (84%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| | ||||| ||||| ||| | ||||| | ||||||||||||||||||| Sbjct 26224 TGGAGCGCTTCACACAGGAAGTGCAGGTGACTGAGGCCAGGTGTTTCTACGGCTTCCAGA 26165 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | ||||||||||| ||||||||||||||||||| | |||||||| || ||||||| || Sbjct 26164 TCGCCATGGAGAACATCCACTCGGAGATGTACAGCCTCCTCATCGACACCTACATCAAGG 26105 Query 61376 AGC 61378 ||| Sbjct 26104 AGC 26102 >seq52 Length=1057507 Score = 132 bits (146), Expect = 4e-26 Identities = 103/123 (84%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| | ||||| ||||| ||| | ||||| | ||||||||||||||||||| Sbjct 14493 TGGAGCGCTTCACACAGGAAGTGCAGGTGACTGAGGCCAGGTGTTTCTACGGCTTCCAGA 14434 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | ||||||||||| ||||||||||||||||||| | |||||||| || ||||||| || Sbjct 14433 TCGCCATGGAGAACATCCACTCGGAGATGTACAGCCTCCTCATCGACACCTACATCAAGG 14374 Query 61376 AGC 61378 ||| Sbjct 14373 AGC 14371 >seq689 Length=20366 Score = 118 bits (130), Expect = 8e-22 Identities = 100/123 (81%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| | ||||| ||||| ||| | ||||| | |||||||| |||||||||| Sbjct 19221 TGGAGCGCTTCACCCAGGAAGTGCAGGTGACTGAGGCCAGGTGTTTCTATGGCTTCCAGA 19280 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | |||||||||| ||||||||||||||||||| | |||||||| || ||||| | || Sbjct 19281 TCACCATGGAGAACATCCACTCGGAGATGTACAGCCTCCTCATCGACACCTACATAAAGG 19340 Query 61376 AGC 61378 ||| Sbjct 19341 AGC 19343 >seq678 Length=440451 Score = 118 bits (130), Expect = 8e-22 Identities = 100/123 (81%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| | ||||| ||||| ||| | ||||| | |||||||| |||||||||| Sbjct 438864 TGGAGCGCTTCACCCAGGAAGTGCAGGTGACTGAGGCCAGGTGTTTCTATGGCTTCCAGA 438923 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | |||||||||| ||||||||||||||||||| | |||||||| || ||||| | || Sbjct 438924 TCACCATGGAGAACATCCACTCGGAGATGTACAGCCTCCTCATCGACACCTACATAAAGG 438983 Query 61376 AGC 61378 ||| Sbjct 438984 AGC 438986 >seq1563 Length=18910200 Score = 102 bits (112), Expect = 6e-17 Identities = 128/173 (74%), Gaps = 2/173 (1%) Strand=Plus/Plus Query 66037 CTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCC 66096 |||||| || || ||||| || || || ||||||||||| ||| | |||||||| Sbjct 8605788 CTCGTCTGGGCTTGTGTACTCTACTATCTCTGTGCACAGATTGCTGGATTTGATGGTGCC 8605847 Query 66097 CAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCC 66156 || |||||| || || ||||| | || || || |||||||| | |||||| || ||||| Sbjct 8605848 CAGATTCTGCTGGTTGCTCTTCCTGTTACAGGCGTCCTTGTAGAGCATGTATGGTGTGCC 8605907 Query 66157 GGTCTCAACTTGGGACTCAATGATGGCGTGCCA-AAGAGCGCGTGCCTTCACC 66208 || || || ||||||||||||| || ||| || || | ||||||||| Sbjct 8605908 AGTTTCTGTCTGTGACTCAATGATGGAGTACCACAACTGC-TGAGCCTTCACC 8605959 >seq2122 Length=1387681 Score = 86.0 bits (94), Expect = 5e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||||||||| || | ||||| || | |||||| |||||||||| ||| |||| Sbjct 1082528 CAGGAGGTGCAGGTCCCTGAGGCACGCTCCTTCTACAGCTTCCAGATCCTCATAGAGACC 1082587 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 || ||||| ||||||||||| | |||||| | || ||||| ||||| Sbjct 1082588 GTTCACTCAGAGATGTACAGCATGCTCATCAACACTTACATTAGGGA 1082634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397549548869120