Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09]
3,808 sequences; 668,481,366 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq2387 206 2e-48
seq963 132 4e-26
seq375 132 4e-26
seq52 132 4e-26
seq689 118 8e-22
seq678 118 8e-22
seq1563 102 6e-17
seq2122 86.0 5e-12
>seq2387
Length=643009
Score = 206 bits (228), Expect = 2e-48
Identities = 387/564 (69%), Gaps = 6/564 (1%)
Strand=Plus/Minus
Query 66014 GATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCAC 66073
|| || || || ||||| |||| ||| || ||| || || || ||||| |||||
Sbjct 87470 GAGGCCAGATTACAGACCGCTACCTCATCCTCGCTGGTGTATTCAACGATTTCTGTGCAG 87411
Query 66074 AGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCC 66133
|| || ||||| |||||||||| ||||| || || ||||| | ||||| || ||
Sbjct 87410 AGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCT 87351
Query 66134 TTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGA 66193
||||||| |||||| || || ||||| || |||||||| || ||||||| ||| ||
Sbjct 87350 TTGTACAGCATGTATGGTGTACCGGTTTCTGTCTGGGACTCGATAATGGCGTACCACAGC 87291
Query 66194 GCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGT 66253
| ||||||||| || |||| || | ||||| | |||||| |
Sbjct 87290 TGCTGAGCCTTCACCACTCGCTTGACCCTCCCCTCCTTCTCGTATTTGGTGTAGAGCTCC 87231
Query 66254 TCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGAC 66313
||||| || ||||| ||| ||| | || |||| || ||||||||||| |||
Sbjct 87230 TCGAACTCCTCTCCCCAGCACTCGTCCAGCCCGGGGCACTCGTTCGGACACATCAGGGAC 87171
Query 66314 CAATCACCATCCTGTTCTACACGACG--CATAAATAGATCAGGTATCCAGAGGGCGTAGA 66371
|| || | || ||| ||| ||| || | || || ||||| ||||||||||
Sbjct 87170 CAGTCTTGGT--TGCTCTCCACCCTCTTCATGAACAAGTCGGGGATCCACAGGGCGTAGA 87113
Query 66372 AGAGATCGCGTGCTCGTTGCTCCTCAATGCC-GTGATTTTTGCGCAAGTCGAGGAACTCA 66430
| ||||| | |||| ||||||||| | || ||| || || || || ||||| ||
Sbjct 87112 AAAGATCTCTGGCTCTTTGCTCCTCCTTCCCTGTG-TTCTTCTTCAGCTCCAGGAAGTCG 87054
Query 66431 AAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCA 66490
|| | ||| |||||||| |||||||| |||||||| | || | ||| ||||
Sbjct 87053 AAAACGTCAAAGTGCCATGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTCTTGTTGCCA 86994
Query 66491 CCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTA 66550
|| ||||||||||| || || |||||| | || | || ||| || || ||||||||
Sbjct 86993 CCCTGGTCGACGTAACGGGCCGTGTTGTTGTAAACTCTCAGCATGGGGACCAGCCCGTTG 86934
Query 66551 GATTTGCCATTGGTGCCGTCGATG 66574
|| ||||||||||| ||| | |||
Sbjct 86933 GAATTGCCATTGGTTCCGGCAATG 86910
>seq963
Length=229635
Score = 132 bits (146), Expect = 4e-26
Identities = 103/123 (84%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315
|||| || ||| | ||||| ||||| ||| | ||||| | |||||||||||||||||||
Sbjct 212152 TGGAGCGCTTCACACAGGAAGTGCAGGTGACTGAGGCCAGGTGTTTCTACGGCTTCCAGA 212211
Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375
| ||||||||||| ||||||||||||||||||| | |||||||| || ||||||| ||
Sbjct 212212 TCGCCATGGAGAACATCCACTCGGAGATGTACAGCCTCCTCATCGACACCTACATCAAGG 212271
Query 61376 AGC 61378
|||
Sbjct 212272 AGC 212274
>seq375
Length=30079
Score = 132 bits (146), Expect = 4e-26
Identities = 103/123 (84%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315
|||| || ||| | ||||| ||||| ||| | ||||| | |||||||||||||||||||
Sbjct 26224 TGGAGCGCTTCACACAGGAAGTGCAGGTGACTGAGGCCAGGTGTTTCTACGGCTTCCAGA 26165
Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375
| ||||||||||| ||||||||||||||||||| | |||||||| || ||||||| ||
Sbjct 26164 TCGCCATGGAGAACATCCACTCGGAGATGTACAGCCTCCTCATCGACACCTACATCAAGG 26105
Query 61376 AGC 61378
|||
Sbjct 26104 AGC 26102
>seq52
Length=1057507
Score = 132 bits (146), Expect = 4e-26
Identities = 103/123 (84%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315
|||| || ||| | ||||| ||||| ||| | ||||| | |||||||||||||||||||
Sbjct 14493 TGGAGCGCTTCACACAGGAAGTGCAGGTGACTGAGGCCAGGTGTTTCTACGGCTTCCAGA 14434
Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375
| ||||||||||| ||||||||||||||||||| | |||||||| || ||||||| ||
Sbjct 14433 TCGCCATGGAGAACATCCACTCGGAGATGTACAGCCTCCTCATCGACACCTACATCAAGG 14374
Query 61376 AGC 61378
|||
Sbjct 14373 AGC 14371
>seq689
Length=20366
Score = 118 bits (130), Expect = 8e-22
Identities = 100/123 (81%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315
|||| || ||| | ||||| ||||| ||| | ||||| | |||||||| ||||||||||
Sbjct 19221 TGGAGCGCTTCACCCAGGAAGTGCAGGTGACTGAGGCCAGGTGTTTCTATGGCTTCCAGA 19280
Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375
| |||||||||| ||||||||||||||||||| | |||||||| || ||||| | ||
Sbjct 19281 TCACCATGGAGAACATCCACTCGGAGATGTACAGCCTCCTCATCGACACCTACATAAAGG 19340
Query 61376 AGC 61378
|||
Sbjct 19341 AGC 19343
>seq678
Length=440451
Score = 118 bits (130), Expect = 8e-22
Identities = 100/123 (81%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315
|||| || ||| | ||||| ||||| ||| | ||||| | |||||||| ||||||||||
Sbjct 438864 TGGAGCGCTTCACCCAGGAAGTGCAGGTGACTGAGGCCAGGTGTTTCTATGGCTTCCAGA 438923
Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375
| |||||||||| ||||||||||||||||||| | |||||||| || ||||| | ||
Sbjct 438924 TCACCATGGAGAACATCCACTCGGAGATGTACAGCCTCCTCATCGACACCTACATAAAGG 438983
Query 61376 AGC 61378
|||
Sbjct 438984 AGC 438986
>seq1563
Length=18910200
Score = 102 bits (112), Expect = 6e-17
Identities = 128/173 (74%), Gaps = 2/173 (1%)
Strand=Plus/Plus
Query 66037 CTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCC 66096
|||||| || || ||||| || || || ||||||||||| ||| | ||||||||
Sbjct 8605788 CTCGTCTGGGCTTGTGTACTCTACTATCTCTGTGCACAGATTGCTGGATTTGATGGTGCC 8605847
Query 66097 CAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCC 66156
|| |||||| || || ||||| | || || || |||||||| | |||||| || |||||
Sbjct 8605848 CAGATTCTGCTGGTTGCTCTTCCTGTTACAGGCGTCCTTGTAGAGCATGTATGGTGTGCC 8605907
Query 66157 GGTCTCAACTTGGGACTCAATGATGGCGTGCCA-AAGAGCGCGTGCCTTCACC 66208
|| || || ||||||||||||| || ||| || || | |||||||||
Sbjct 8605908 AGTTTCTGTCTGTGACTCAATGATGGAGTACCACAACTGC-TGAGCCTTCACC 8605959
>seq2122
Length=1387681
Score = 86.0 bits (94), Expect = 5e-12
Identities = 83/107 (78%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329
||||||||||| || | ||||| || | |||||| |||||||||| ||| ||||
Sbjct 1082528 CAGGAGGTGCAGGTCCCTGAGGCACGCTCCTTCTACAGCTTCCAGATCCTCATAGAGACC 1082587
Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376
|| ||||| ||||||||||| | |||||| | || ||||| |||||
Sbjct 1082588 GTTCACTCAGAGATGTACAGCATGCTCATCAACACTTACATTAGGGA 1082634
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397549548869120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |