Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepisosteus_20oculatus_20[refseq_20GCF_5F000242695.1_202012-01-13] 1,926 sequences; 945,878,036 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq70 95.1 2e-17 seq27 95.1 2e-17 >seq70 Length=267082 Score = 95.1 bits (104), Expect = 2e-17 Identities = 83/101 (82%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 118 TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGCGT 176 ||||||| | ||||||| |||| | || || ||| | ||| |||||| |||||||| Sbjct 41111 TTACCCGCGCTTGTCGGCGAAGGGTCGACACACGCTGA-TCCATTCAGTGTGGCGCGCGT 41169 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 || |||| | ||||||||||||||||||||||||||||||| Sbjct 41170 GCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 41210 >seq27 Length=15260519 Score = 95.1 bits (104), Expect = 2e-17 Identities = 108/141 (77%), Gaps = 3/141 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||||||||| ||||| ||||||||| || | ||| Sbjct 2581418 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCTGCGCTTACT-GGGAGTTC 2581475 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG-ATGAAATTTCAAAGATT 119 || ||| | | || ||||||||| | | | |||||||| | ||| || | || Sbjct 2581476 CTTGTTCATGGGAAATAATTGCAATCACCAAACCCCATCATGCATGGGGTTCAGCGGGTT 2581535 Query 120 ACCCGGACCTGTCGGCCAAGG 140 ||||| ||||||||| |||| Sbjct 2581536 ACCCGCACCTGTCGGAGAAGG 2581556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751985969090