Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepisosteus_20oculatus_20[refseq_20GCF_5F000242695.1_202012-01-13] 1,926 sequences; 945,878,036 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq70 145 1e-32 >seq70 Length=267082 Score = 145 bits (160), Expect = 1e-32 Identities = 200/277 (72%), Gaps = 17/277 (6%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| | | |||| ||| || | | | | | |||||||||||||||| ||||||| Sbjct 41911 ATGCTCTTAGCCGAGTGTCCCGCGGGGTCCGAAGCGTTTACTTTGAAAAAATGAGAGTGT 41852 Query 98 TCAAAGCAGGCCTTTGCTC--GAATACATTAGCATGGAATAATAGAATAGGACGTGCGGT 155 |||||||||||| | | | ||| || ||| |||||| | ||||||||| | |||| Sbjct 41851 TCAAAGCAGGCCGGTACGCCTGAACACCGCAGCTAGGAATACTGGAATAGGAC-TCCGGT 41793 Query 156 TCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAG 215 |||||||||| |||||| | ||||||| ||||| | |||||| | | Sbjct 41792 TCTATTTTGTGGGTTTCCA------------TGATTAAGAGGGACGGCCGGGGGCATTCG 41745 Query 216 TATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGT 275 |||| | |||||||||||||||||| ||||| || | |||||||| | Sbjct 41744 TATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACGAAAGCGAAAGCAT 41685 Query 276 TCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 | ||||| |||||||||||||||| |||||||||| Sbjct 41684 TTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 41649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915182373248