Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepisosteus_20oculatus_20[refseq_20GCF_5F000242695.1_202012-01-13] 1,926 sequences; 945,878,036 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq14 127 9e-27 seq17 118 4e-24 seq6 116 2e-23 >seq14 Length=32369425 Score = 127 bits (140), Expect = 9e-27 Identities = 97/115 (84%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 ||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||| Sbjct 31836452 GGACCTGAAAGATGGTGAACTATGCCTGGGCAGGACGAAGCCAGAGGAAACTCTGGTGGA 31836393 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || || || ||||||| ||||||||| || || | |||||||||||||||| Sbjct 31836392 GGTCCGTAGTGGTTCTGAAATGCAAATCGGTCATCTGACTTGGGTATAGGGGCGA 31836338 >seq17 Length=32595267 Score = 118 bits (130), Expect = 4e-24 Identities = 94/113 (83%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||| Sbjct 6158840 GGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAAGAAACTCTGGTGGA 6158781 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 || | |||||| ||| |||||||| | ||||| | ||||||||| ||| Sbjct 6158780 GGTCCATAGCGGTCCTGATGTGCAAATTGGTCGTCCGACCTGGGTATAGAGGC 6158728 >seq6 Length=40768737 Score = 116 bits (128), Expect = 2e-23 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||| ||||||||| | || |||| |||||| | | ||||| ||||||| Sbjct 18661531 GAGTCGGGTTGTTTGTGAATGCAGCCCAAAGTGGGTGGTAAACTCCATCTAAGGCTAAAT 18661472 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 18661471 ACCGGCACGAGACCGATAGTCGACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 18661412 Query 160 AGAGAGTTAAAAAG 173 |||||||| || || Sbjct 18661411 AGAGAGTTCAAGAG 18661398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079958687300