Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepisosteus_20oculatus_20[refseq_20GCF_5F000242695.1_202012-01-13] 1,926 sequences; 945,878,036 total letters Query= AAMG01000750.1 Length=102 Score E Sequences producing significant alignments: (Bits) Value seq6 149 3e-34 seq28 134 6e-30 seq14 134 6e-30 seq4 116 2e-24 >seq6 Length=40768737 Score = 149 bits (164), Expect = 3e-34 Identities = 94/102 (92%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 18661750 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAAGAGGGAAGAGCCCAGCG 18661691 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 ||||||||||| || | | |||||||||| |||||||||| Sbjct 18661690 CCGAATCCCCGTCCGTCCGGCGGGCGCGGGAAATGTGGCGTA 18661649 >seq28 Length=5380255 Score = 134 bits (148), Expect = 6e-30 Identities = 91/102 (89%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||| Sbjct 4254237 GGAAAATAAACTAACCAGGATTCCCTCAGTAATGGCGAGTGAAGAGGGAAGAGCCCAGCG 4254178 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 |||||| |||||| | | |||||||||| |||||||||| Sbjct 4254177 CCGAATTTCCGCCCGTCCGGCGGGCGCGGGAAATGTGGCGTA 4254136 >seq14 Length=32369425 Score = 134 bits (148), Expect = 6e-30 Identities = 88/97 (91%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 31837308 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAAGAGGGAAGAGCCCAGCG 31837249 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTG 97 |||||||||| | | || |||||||||| ||||| Sbjct 31837248 CCGAATCCCCATCTGTCCGTTGGGCGCGGGAAATGTG 31837212 >seq4 Length=73198282 Score = 116 bits (128), Expect = 2e-24 Identities = 87/102 (85%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||| | Sbjct 10327327 GGAAAAGAAACTAACCAGAATTCCCTCAGTAATGGCGAGTGAAGAGGGAAGAGCCCAGTG 10327386 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 || |||||||| || | | ||| | |||| ||||||| || Sbjct 10327387 CCCAATCCCCGTCCGTCCGGTGGGTGTGGGAAATGTGGCATA 10327428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230395839840