Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepisosteus_20oculatus_20[refseq_20GCF_5F000242695.1_202012-01-13] 1,926 sequences; 945,878,036 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq70 246 5e-63 seq17 113 7e-23 seq16 86.0 1e-14 seq102 84.2 3e-14 seq8 75.2 2e-11 >seq70 Length=267082 Score = 246 bits (272), Expect = 5e-63 Identities = 204/246 (83%), Gaps = 5/246 (2%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||| |||||||||| |||| | ||||||||||||||||||||||||||||||| || Sbjct 41154 TCAGTGTGGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TC 41212 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCG 135 | || | |||||| | |||| |||||||||||||||| | | || ||| | | Sbjct 41213 CATCT-CGTGTGGCTGAACGCCACTAGTCCCTCTAAGAAGTTGGACGCCGACCGCACGGG 41271 Query 136 ATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATC 192 | | ||| |||||| | |||||||||||||||||||||||||||||||||| Sbjct 41272 GCCGCGTAACTAGTTAGCATGCCGGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATC 41331 Query 193 ACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAA 252 |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| Sbjct 41332 GCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCAA 41391 Query 253 TCTGTC 258 |||||| Sbjct 41392 TCTGTC 41397 >seq17 Length=32595267 Score = 113 bits (124), Expect = 7e-23 Identities = 110/141 (78%), Gaps = 3/141 (2%) Strand=Plus/Minus Query 86 TGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGATGGGG---C 142 |||||| | |||| |||||||||||||||| | | || ||| | ||| | Sbjct 21964219 TGGCTGAACGCCACTAGTCCCTCTAAGAAGTTGGACGCCGACCGCGTGGGGCCGGGTAAC 21964160 Query 143 TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAA 202 || |||||| |||||||||||||||| ||| ||||||||||||||||||||||| Sbjct 21964159 TAGTTAGCACACCGGAGTCTCGTTCGTTATCGTAATCAACCAGACAAATCACTCCACCAA 21964100 Query 203 CTAAGAACGGCCATGCACCAC 223 ||||||||||||||||||||| Sbjct 21964099 CTAAGAACGGCCATGCACCAC 21964079 >seq16 Length=21174446 Score = 86.0 bits (94), Expect = 1e-14 Identities = 60/68 (88%), Gaps = 3/68 (4%) Strand=Plus/Plus Query 190 ATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTAT 249 ||| |||||||||| |||||| |||||||||||||||||| |||||| ||||||| || Sbjct 12237377 ATCGCTCCACCAACGAAGAACAGCCATGCACCACCACCCACAGAATCGAGAAAGA---AT 12237433 Query 250 CAATCTGT 257 |||||||| Sbjct 12237434 CAATCTGT 12237441 >seq102 Length=153073 Score = 84.2 bits (92), Expect = 3e-14 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 164 GTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCAC 223 |||| || || |||||||||||||||||| |||| |||||||||| || ||| |||||| Sbjct 125003 GTTCATTTTCAGAATTAACCAGACAAATCTTTCCAACAACTAAGAATGGTCATTCACCAC 125062 Query 224 CACCCATAGAA 234 |||||| |||| Sbjct 125063 CACCCACAGAA 125073 >seq8 Length=50348508 Score = 75.2 bits (82), Expect = 2e-11 Identities = 72/90 (80%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 172 TCGGAATTAACCAGACAAATCACTCCACCAACTA-AGAACGGCCATGCACCACCACCCAT 230 || |||||||| ||||||||||| |||||||||| |||| | ||| ||| || ||| | Sbjct 47198589 TCAGAATTAACAAGACAAATCACCCCACCAACTAGAGAAAG-CCAGGCAACATTACCTAC 47198531 Query 231 AGAATCAAGAAAGAGCTATCAATCTGTCCT 260 || | |||||||||||| |||| ||||| Sbjct 47198530 GGATTGAAGAAAGAGCTAAAAATCAGTCCT 47198501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796785133206