Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepisosteus_20oculatus_20[refseq_20GCF_5F000242695.1_202012-01-13] 1,926 sequences; 945,878,036 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq70 93.3 8e-17 seq27 89.7 1e-15 >seq70 Length=267082 Score = 93.3 bits (102), Expect = 8e-17 Identities = 83/100 (83%), Gaps = 3/100 (3%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||||| ||| | |||| || | | ||| |||||||||||||||| Sbjct 41251 CTTCTTAGAGGGACTAGTGGCGTTCAGCCACACGA-GATGGAG-CAATAACAGGTCTGTG 41194 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170 |||||||||||||| | |||| |||||||||| ||||||| Sbjct 41193 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACACTGA 41154 >seq27 Length=15260519 Score = 89.7 bits (98), Expect = 1e-15 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 247 ATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTT 306 |||||||||||| | | | ||| ||||| || ||||||||| ||||| ||| |||||| Sbjct 2581500 ATTGCAATTATTTCCCATGAACAAGGAACTCCCAGTAAGCGCAGGTCATAAGCTCGCGTT 2581441 Query 307 GATTACGTCCCTGCCCTTTGTA 328 ||||| |||||||||||||||| Sbjct 2581440 GATTAAGTCCCTGCCCTTTGTA 2581419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947181756928