Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepisosteus_20oculatus_20[refseq_20GCF_5F000242695.1_202012-01-13] 1,926 sequences; 945,878,036 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq17 100 5e-19 seq14 100 5e-19 seq3 89.7 8e-16 seq9 86.0 1e-14 seq20 77.0 5e-12 seq5 77.0 5e-12 seq31 75.2 2e-11 seq6 73.4 6e-11 >seq17 Length=32595267 Score = 100 bits (110), Expect = 5e-19 Identities = 92/114 (81%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| || | || |||| || || | Sbjct 8831490 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGCGTGTGCTTGGCTGAGGAGCCAAT 8831547 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 8831548 GGTGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 8831601 >seq14 Length=32369425 Score = 100 bits (110), Expect = 5e-19 Identities = 92/114 (81%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| || | || |||| || || | Sbjct 26698994 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGCGTGTGCTTGGCTGAGGAGCCAAT 26698937 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 26698936 GGTGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 26698883 >seq3 Length=56798892 Score = 89.7 bits (98), Expect = 8e-16 Identities = 97/125 (78%), Gaps = 3/125 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | | |||| || ||||| || | || |||| || || | Sbjct 36532683 GTACGAGAGGAACCGCAGG-TCCAGA-TATTTGGTGCATGTGCTTGGCTGAGGAGCCAAT 36532626 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||||| |||||||| |||||| ||||||| ||| ||||| |||| Sbjct 36532625 GGTGCGAAGCTACCATCTGTGGGATTATGACTGAACACCTCTAAATCATAATCC-TGCCT 36532567 Query 121 GAACG 125 |||| Sbjct 36532566 AAACG 36532562 Score = 75.2 bits (82), Expect = 2e-11 Identities = 84/110 (76%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 5 GAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCG 64 |||||||||||| | |||||| | ||||| | || | || | || || || || | Sbjct 41174022 GAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTCTGTGTTTGGCCGAGAAGCCAATGGTG 41174079 Query 65 CGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 |||||||||| ||| |||||||| ||||||||||||| | |||||||| Sbjct 41174080 TGAAGCTACCACCTGTGGGATTATGACTGAACGCCTCTACGCCAGAATCC 41174129 >seq9 Length=53241385 Score = 86.0 bits (94), Expect = 1e-14 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | |||| || | || |||| || || | Sbjct 33824766 GTACGAGAGGAACCGCAGG-TTCAGAC-ATGTGGTGCGTGTGCTTGGCTGAGGAGCCAAT 33824709 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| ||| |||| |||||| ||||||||||||||||| Sbjct 33824708 GGTGCGAAGCTACCATCTGTGGGACTATGACTGAACACCTCTAAGTCAGAATCC 33824655 Score = 82.4 bits (90), Expect = 1e-13 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 57 CAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 ||||| | ||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 2511344 CAGTGGCACGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 2511401 Score = 78.8 bits (86), Expect = 2e-12 Identities = 48/51 (94%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 64 GCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 19940215 GCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 19940165 >seq20 Length=14739584 Score = 77.0 bits (84), Expect = 5e-12 Identities = 86/112 (77%), Gaps = 5/112 (4%) Strand=Plus/Minus Query 3 ACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGC 62 || ||| ||||||| | |||||| | ||||| | | | || |||| ||||||| Sbjct 2163177 ACAAGAAGAACCGCAGG-TTCAGAC-ATTTGGTGTCAGTGCTTGGCTGA---GGCAGTGG 2163123 Query 63 CGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 || ||||||||||||| |||||||| ||||| |||||||||||||| ||| Sbjct 2163122 TGCAAAGCTACCATCTGTGGGATTATGACTGAAAGCCTCTAAGTCAGATTCC 2163071 >seq5 Length=51417047 Score = 77.0 bits (84), Expect = 5e-12 Identities = 59/70 (84%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 45 TGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAA 104 || |||| || || || |||||||||||||||| |||| ||| |||||||||||||| Sbjct 3928795 TGGCTGAGGAGCCAATGGTGCGAAGCTACCATCTGTGGGATAATGACTGAACGCCTCTAA 3928736 Query 105 GTCAGAATCC 114 |||||||||| Sbjct 3928735 GTCAGAATCC 3928726 >seq31 Length=1941172 Score = 75.2 bits (82), Expect = 2e-11 Identities = 87/115 (76%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| ||||| |||| | | |||||| | ||||| | || | || |||| || || | Sbjct 844211 GTATGAGAGAAACCACAGG-TTCAGAC-ATTTGGTGTCTGTGCTTGGCTGAGGAGCCAAT 844268 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCA 115 | | | ||| |||||||| |||||||| |||||| |||||||||||||||||| Sbjct 844269 GGTGTGTAGCGACCATCTGTGGGATTATGACTGAACACCTCTAAGTCAGAATCCA 844323 >seq6 Length=40768737 Score = 73.4 bits (80), Expect = 6e-11 Identities = 57/68 (84%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 48 CTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTC 107 |||| || || || |||||||||||||||| |||||||| ||||| |||||||| || Sbjct 18130040 CTGAGAAGCCAATGGTGCGAAGCTACCATCTGTGGGATTATGACTGAATGCCTCTAAATC 18129981 Query 108 AGAATCCA 115 |||||||| Sbjct 18129980 AGAATCCA 18129973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819184715264