Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepisosteus_20oculatus_20[refseq_20GCF_5F000242695.1_202012-01-13] 1,926 sequences; 945,878,036 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq13 185 3e-44 seq1 165 2e-38 seq4 149 2e-33 seq3 122 3e-25 seq2 120 9e-25 seq26 87.8 5e-15 seq5 84.2 7e-14 >seq13 Length=17115052 Score = 185 bits (204), Expect = 3e-44 Identities = 162/202 (80%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 26 AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTG 85 |||||||||||||| ||||| | ||| | ||||||| | ||| |||| |||| | Sbjct 2698593 AAAGAGCCCTGTATTGTTATTTTTCGTCCCAACCTCCCTGACCCGGTGGTGGGAAATTGG 2698534 Query 86 CGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGA 145 | | |||||||||||||||||||||||| |||||||| ||||| ||||| ||| |||| Sbjct 2698533 CACCCCTGCTGCCTTCCTTGGATGTGGTCCCCGTTTCTTGGGCTCTCTCTCTGGATTCGA 2698474 Query 146 ACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTT 205 ||||| ||||||||||||| || | || |||||||| || |||||||||||||| Sbjct 2698473 ACCCTGATTCCCCGTTACCTGTGGTCACAGTGGTAGGCACAGATGGTACCATCGAAAGTT 2698414 Query 206 GATAGGGCAGAAATTTGAATGA 227 ||||||||||| ||| |||||| Sbjct 2698413 GATAGGGCAGACATTCGAATGA 2698392 >seq1 Length=69065196 Score = 165 bits (182), Expect = 2e-38 Identities = 128/150 (85%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 || ||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||| Sbjct 47011156 GTGCTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACC 47011097 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||| | ||||| |||||||||||||||||||||||||||||||| ||||| ||| || Sbjct 47011096 TCCCCGAGCCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGGTGTGGCAGCTGT 47011037 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCC 149 || |||| | ||||||| |||| ||||||| Sbjct 47011036 TTTTCAGACCCCCTCTCTGGAA-CGAACCC 47011008 Score = 78.8 bits (86), Expect = 3e-12 Identities = 73/92 (79%), Gaps = 3/92 (3%) Strand=Plus/Plus Query 393 ATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTA 452 |||||| ||| | |||||||||||||||||||| |||||||||||||| | | | Sbjct 56511782 ATCAAAGGAACCACAACTGATTTAATGAGCCATTTGCAGTTTCACTGTACTGGCCGTGTG 56511841 Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGAC 484 || | |||||||||||| | |||||||||| Sbjct 56511842 TA---AAACATGCATGGCTCAGTCTTTGAGAC 56511870 >seq4 Length=73198282 Score = 149 bits (164), Expect = 2e-33 Identities = 115/134 (86%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 372 TTATCCATGTAGTAAGGTA-CTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCA 430 ||||||| |||| || | | |||||| ||| |||||||||||||||||||||||||| Sbjct 29116631 TTATCCAAGTAGCTTGGGAGCGATCAAAGGAACCATAACTGATTTAATGAGCCATTCGCA 29116690 Query 431 GTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCAT 490 ||||||||||| | | | |||||||||||||||||||||||||||||||||||||| Sbjct 29116691 GTTTCACTGTACCGGCAGTGTGTACTTAGACATGCATGGCTTAATCTTTGAGACAAGCAT 29116750 Query 491 ATGACTACTGGCAG 504 ||| |||||||||| Sbjct 29116751 ATG-CTACTGGCAG 29116763 Score = 104 bits (114), Expect = 7e-20 Identities = 81/97 (84%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454 |||| ||| ||||| |||| ||||||||||| ||||||||||||| | | | | Sbjct 26548490 CAAAATAACCATAACCGATTAAATGAGCCATTTACAGTTTCACTGTACTGGCTATGTGGA 26548549 Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATA 491 ||||||||||||||||||||||||||||||||||||| Sbjct 26548550 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATA 26548586 >seq3 Length=56798892 Score = 122 bits (134), Expect = 3e-25 Identities = 83/92 (90%), Gaps = 1/92 (1%) Strand=Plus/Minus Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTT 472 ||||||||||||||||||||||||||||| | | | |||||||||||||||||||| Sbjct 18970576 TTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGTGTACTTAGACATGCATGGCTT 18970517 Query 473 AATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||| |||||||||| Sbjct 18970516 AATCTTTGAGACAAGCATATG-CTACTGGCAG 18970486 Score = 93.3 bits (102), Expect = 1e-16 Identities = 112/149 (75%), Gaps = 4/149 (3%) Strand=Plus/Plus Query 338 TTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATC--CATGTAG-TAAGGTACTAT 394 || ||||| | ||| |||||||||| |||| |||| || ||| | ||| | | Sbjct 27900364 TTGTTAGCCTACATTTGCTCTAGAATAGCCACAGTTAGTGACAAATAGCTTAGGAGCAGT 27900423 Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454 |||| ||| || ||||||||||||||| ||| ||||||| ||||| || ||| | | Sbjct 27900424 CAAAAGAACCATGACTGATTTAATGAGCTATTTGCAGTTTTGCTGTACAGGCTGCGTGCA 27900483 Query 455 CTTAGACATGCATGGCTTAATCTTTGAGA 483 |||||||| |||||||||||| |||||| Sbjct 27900484 GTTAGACATACATGGCTTAATC-TTGAGA 27900511 >seq2 Length=68575853 Score = 120 bits (132), Expect = 9e-25 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 44 ATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCT 103 |||| ||| |||| |||| | | | | | || |||||||| | || ||||||||||| Sbjct 2065010 ATTTTTTGACACTTCCTCGTTGAGCCAGAAGTGAGTAATTTGTTCTCCAGCTGCCTTCCT 2064951 Query 104 TGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTAC 163 |||||| |||||| |||||| ||||||||||| ||||| ||||||| ||||| |||||| Sbjct 2064950 TGGATGCAGTAGCCATTTCTCTGGCTCCCTCTCTGGAATAGAACCCTGATTCCTCGTTAC 2064891 Query 164 CCGTTGATACCATGGT 179 | || | |||||||| Sbjct 2064890 CAGTGGTCACCATGGT 2064875 >seq26 Length=13772684 Score = 87.8 bits (96), Expect = 5e-15 Identities = 78/93 (84%), Gaps = 5/93 (5%) Strand=Plus/Minus Query 414 TTAATGAGCCATTCGCAGTTTCACTGTAT-AG-ATTGCTTATACTTAGACATGCATGGCT 471 |||||||||||| ||||||||||||||| || |||| | |||||| |||||||||||| Sbjct 7133658 TTAATGAGCCATCTGCAGTTTCACTGTATTAGCATTG--TGTACTTAAACATGCATGGCT 7133601 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||| |||| ||||||| |||| |||| Sbjct 7133600 TAATCTTGGAGAGCGGCATATG-TTACTAGCAG 7133569 >seq5 Length=51417047 Score = 84.2 bits (92), Expect = 7e-14 Identities = 75/92 (82%), Gaps = 3/92 (3%) Strand=Plus/Minus Query 351 TTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTA-CTATCAAATAAACGATAAC 409 ||| |||||||||| ||| |||||||| |||| || | | |||| | ||| ||||| Sbjct 30560207 TTAACTCTAGAATTGCCA--GTTATCCAAGTAGCTTGGGAGCGATCAGAGGAACCATAAC 30560150 Query 410 TGATTTAATGAGCCATTCGCAGTTTCACTGTA 441 |||| |||||||||||||||||||||||||| Sbjct 30560149 AGATTAAATGAGCCATTCGCAGTTTCACTGTA 30560118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510370909696