Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepisosteus_20oculatus_20[refseq_20GCF_5F000242695.1_202012-01-13] 1,926 sequences; 945,878,036 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1 107 2e-18 seq3 104 2e-17 seq6 87.8 1e-12 seq11 86.0 5e-12 >seq1 Length=69065196 Score = 107 bits (118), Expect = 2e-18 Identities = 95/116 (82%), Gaps = 2/116 (2%) Strand=Plus/Plus Query 61256 TGGAACG-TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAG 61314 ||||| | ||| || |||||||| |||||| | || || ||||||||||| |||||||| Sbjct 49401173 TGGAATGCTTTAGC-CAGGAGGTTCAAGTGACTGAAGCCCGTTGTTTCTATGGCTTCCAA 49401231 Query 61315 ATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370 || ||||||||||| ||||||| || |||||||| | |||||||| ||||| || Sbjct 49401232 ATCGCCATGGAGAACATCCACTCTGAAATGTACAGCCTGCTCATCGACACGTATAT 49401287 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 61027 GAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGAT 61086 || ||||| || |||||| ||||| || || || | |||||||||||||| | || Sbjct 49400214 GAGCCCCTCCTGAGAGAGAACCCTCGGCGGTTTGTCATCTTCCCCATCGAGTACCACGAC 49400273 Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 || |||| |||||||| ||||| || || ||||||||||| | ||||||||| Sbjct 49400274 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACCGCGGAGGAGGT 49400326 >seq3 Length=56798892 Score = 104 bits (114), Expect = 2e-17 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| ||||| || | || ||||||||||| ||||| ||||| |||| ||||| || Sbjct 12782467 GGTGTACTCCACCACCTCTGTGCACAGATTGCTGCACTTGATGGTACCCAGGTTCTGCTG 12782526 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| | ||||| ||||| ||||| | |||||| || || |||||||| || Sbjct 12782527 GTTGCTCTTCCTGTTGCACGCATCTTTGTAAACCATGTAGGGGGTTCCGGTCTCCGTCTG 12782586 Query 66169 GGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACC 66208 ||||| ||||| |||| ||| || ||||||||||| Sbjct 12782587 AGACTCGATGATCGCGTACCACAGTTGCTGTGCCTTCACC 12782626 >seq6 Length=40768737 Score = 87.8 bits (96), Expect = 1e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTAC 61101 ||||| || || || ||||| | ||||||||| |||| | || || |||| |||||| Sbjct 2468980 GAGAACCCGCGGCGCTTCGTCATCTTCCCCATCCAGTACCACGACATCTGGCAGATGTAC 2468921 Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 || |||||||| || ||||||||||||| ||| ||||| Sbjct 2468920 AAGAAGGCGGAGGCCTCCTTCTGGACGGCGGAAGAGGT 2468883 >seq11 Length=41528230 Score = 86.0 bits (94), Expect = 5e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||||||||| || | ||||| || ||||| ||||| |||||||| ||| ||||| Sbjct 33621759 CAGGAGGTGCAGGTCCCCGAGGCCCGATGTTTTTACGGTTTCCAGATCCTCATCGAGAAC 33621700 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 || ||||| ||||||||| | | ||||| | || |||||| |||| Sbjct 33621699 GTGCACTCTGAGATGTACGGCATGCTCATTAACACCTACATCCGGGA 33621653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397558667836640