Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepisosteus_20oculatus_20[refseq_20GCF_5F000242695.1_202012-01-13] 1,926 sequences; 945,878,036 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq5 95.1 5e-14 seq2 95.1 5e-14 seq16 91.5 6e-13 >seq5 Length=51417047 Score = 95.1 bits (104), Expect = 5e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 349072 GGCGTCGAGAATCTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCC 349131 ||||| || |||||||||| | ||| | ||||| || | |||| ||| || || || Sbjct 6983193 GGCGTTGATGATCTCCTTGATCCGGGGAACCCCCAGAGTGATGTTCATGGAGGCAACCCC 6983134 Query 349132 GGCAAAGTGGAAGGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGG 349186 ||| ||||||||||||| ||||||| ||||||| |||||| ||||||| |||| Sbjct 6983133 GGCGAAGTGGAAGGTCTTCAGGGTCATCTGCGTGCCGGGCTCTCCGATGCTCTGG 6983079 >seq2 Length=68575853 Score = 95.1 bits (104), Expect = 5e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 349084 CTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGGAA 349143 ||||||||| | || | ||||||||| ||||||||||||| |||||||| ||||||| Sbjct 60633660 CTCCTTGAGACGCGGGACGCCCAGGGTGACGTTCTTGGCCGACACGCCGGCGTAGTGGAA 60633719 Query 349144 GGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCTAC 349203 ||| | ||||||| ||| ||| ||||| || | | ||||| | || || || || Sbjct 60633720 GGTGTTCAGGGTCATCTGGGTGGCCGGCTCACCCAGGGACTGGGCAGCCAGAGCTCCGAC 60633779 Query 349204 CATCTCGCCGGG 349215 |||||| || || Sbjct 60633780 CATCTCCCCTGG 60633791 >seq16 Length=21174446 Score = 91.5 bits (100), Expect = 6e-13 Identities = 116/158 (73%), Gaps = 4/158 (3%) Strand=Plus/Minus Query 448987 CTCGAGCAACATGGCGTAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTC 449046 ||||| || |||| || |||||| || || ||| || |||| ||||| | || |||||| Sbjct 15301424 CTCGATCAGCATGCCGATGGTCATACGGGAGGGGAAGCCATGGGGGTTGAAGAGGATGTC 15301365 Query 449047 GGGCGTCTCGCCGGCCGCGTTGAAGGGCATGTCCTCGGGGTTGACCAC--CAGGCCGTTG 449104 |||| | |||| | || |||||||||||||||| || | |||| | ||| | Sbjct 15301364 GGGCACCATGCCGCTCTCGGTGAAGGGCATGTCCTC--TGTGGGCCACAGCCGGCTCAGG 15301307 Query 449105 ACGCCCTTCTGGCCGTGGCGGCTGCAGAACTTGTCCCC 449142 | ||||||||| || || |||||| || |||||||| Sbjct 15301306 ATGCCCTTCTGCCCATGCCGGCTGGCAAATTTGTCCCC 15301269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084686500398948